Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng; Nitya Thakkar; Hannah L. Harris; Megan Zhang; Susanna Liu; Mark Gerstein; Erez Lieberman-Aiden; M. Jordan Rowley; William Stafford Noble; Gamze Gürsoy; Ritambhara Singh

doi:10.1101/2022.04.19.488754

New Results

Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng, Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein, Erez Lieberman-Aiden, M. Jordan Rowley, William Stafford Noble, Gamze Gürsoy, Ritambhara Singh

doi: https://doi.org/10.1101/2022.04.19.488754

Suchen Zheng

1Department of Computer Science, Brown University

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Nitya Thakkar

1Department of Computer Science, Brown University

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Hannah L. Harris

2Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Megan Zhang

5Data Science and Statistics, Yale University

6Molecular, Cellular, and Developmental Biology, Yale University

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Susanna Liu

5Data Science and Statistics, Yale University

6Molecular, Cellular, and Developmental Biology, Yale University

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Mark Gerstein

3Computational Biology and Bioinformatics, Yale University

4Molecular Biophysics & Biochemistry, Yale University

5Data Science and Statistics, Yale University

7Computer Science, Yale University

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Erez Lieberman-Aiden

8Department of Genetics, Baylor College of Medicine

9Department of Computer Science, Rice University

10Computational and Applied Mathematics, Rice University

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

M. Jordan Rowley

2Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

William Stafford Noble

11Department of Genome Sciences, University of Washington

12Paul G. Allen School of Computer Science and Engineering, University of Washington

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Gamze Gürsoy

13Department of Biomedical Informatics, Columbia University

14New York Genome Center

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site
For correspondence: ritambhara@brown.edu

Ritambhara Singh

1Department of Computer Science, Brown University

15Center for Computational Molecular Biology, Brown University

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site
For correspondence: ritambhara@brown.edu

Abstract
Full Text
Info/History
Metrics
Data/Code
Preview PDF

https://www.encodeproject.org/

View the discussion thread.

PreviousNext

Posted April 19, 2022.

Download PDF

Data/Code

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Your Email *

Your Name *

Send To *

Enter multiple addresses on separate lines or separate them with commas.

You are going to email the following Predicting A/B compartments from histone modifications using deep learning

Message Subject (Your Name) has forwarded a page to you from bioRxiv

Message Body (Your Name) thought you would like to see this page from the bioRxiv website.

Your Personal Message

CAPTCHA

This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.

Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng, Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein, Erez Lieberman-Aiden, M. Jordan Rowley, William Stafford Noble, Gamze Gürsoy, Ritambhara Singh

bioRxiv 2022.04.19.488754; doi: https://doi.org/10.1101/2022.04.19.488754

Share This Article:

Citation Tools

Predicting A/B compartments from histone modifications using deep learning

Suchen Zheng, Nitya Thakkar, Hannah L. Harris, Megan Zhang, Susanna Liu, Mark Gerstein, Erez Lieberman-Aiden, M. Jordan Rowley, William Stafford Noble, Gamze Gürsoy, Ritambhara Singh

bioRxiv 2022.04.19.488754; doi: https://doi.org/10.1101/2022.04.19.488754

Citation Manager Formats

BibTeX
Bookends
EasyBib
EndNote (tagged)
EndNote 8 (xml)
Medlars
Mendeley
Papers
RefWorks Tagged
Ref Manager
RIS
Zotero

Tweet Widget
Facebook Like
Google Plus One

Subject Area

Bioinformatics

Subject Areas

All Articles

Animal Behavior and Cognition (4399)
Biochemistry (9637)
Bioengineering (7128)
Bioinformatics (24959)
Biophysics (12678)
Cancer Biology (10003)
Cell Biology (14406)
Clinical Trials (138)
Developmental Biology (7992)
Ecology (12155)
Epidemiology (2067)
Evolutionary Biology (16030)
Genetics (10957)
Genomics (14785)
Immunology (9911)
Microbiology (23750)
Molecular Biology (9517)
Neuroscience (51103)
Paleontology (370)
Pathology (1547)
Pharmacology and Toxicology (2694)
Physiology (4038)
Plant Biology (8700)
Scientific Communication and Education (1512)
Synthetic Biology (2406)
Systems Biology (6461)
Zoology (1350)