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A motor-based approach to induce chromosome-specific mis-segregations in human cells

My Anh Truong, Paula Cané-Gasull, Sippe G. de Vries, Wilco Nijenhuis, René Wardenaar, Lukas C. Kapitein, Floris Foijer, Susanne M.A. Lens
doi: https://doi.org/10.1101/2022.04.19.488790
My Anh Truong
1Oncode Institute, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
2Center for Molecular Medicine, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
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Paula Cané-Gasull
1Oncode Institute, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
2Center for Molecular Medicine, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
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Sippe G. de Vries
1Oncode Institute, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
2Center for Molecular Medicine, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
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Wilco Nijenhuis
3Cell Biology, Neurobiology and Biophysics, Department of Biology, Faculty of Science, Utrecht University, 3584 CH Utrecht, the Netherlands
4Centre for Living Technologies, Alliance TU/e, WUR, UU, UMC Utrecht, Princetonlaan 6, 3584 CB Utrecht, the Netherlands
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René Wardenaar
5European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, University Medical Center Groningen, 9713 AV Groningen, the Netherlands
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Lukas C. Kapitein
3Cell Biology, Neurobiology and Biophysics, Department of Biology, Faculty of Science, Utrecht University, 3584 CH Utrecht, the Netherlands
4Centre for Living Technologies, Alliance TU/e, WUR, UU, UMC Utrecht, Princetonlaan 6, 3584 CB Utrecht, the Netherlands
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Floris Foijer
5European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, University Medical Center Groningen, 9713 AV Groningen, the Netherlands
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Susanne M.A. Lens
1Oncode Institute, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
2Center for Molecular Medicine, University Medical Center Utrecht, 3584 CG Utrecht, the Netherlands
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  • For correspondence: s.m.a.lens@umcutrecht.nl
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Abstract

Various cancer types exhibit highly characteristic and recurrent aneuploidy patterns. The origin of these cancer type-specific karyotypes, and the extent to which they contribute to cancer progression, remains to be elucidated, partly because introducing or eliminating specific chromosomes in human cells still poses a challenge. Here, we describe a novel strategy to mis-segregate specific chromosomes at will in different human cell types. We employed Tet repressor (TetR) or nuclease dead Cas9 (dCas9) to link a plant-derived microtubule minus-end-directed kinesin (Physcomitrella patens Kinesin14VIb) to integrated Tet operon repeats and chromosome-specific endogenous repeats, respectively. By live- and fixed-cell imaging, we observed poleward movement of the targeted loci during (pro)metaphase. Kinesin14VIb-mediated pulling forces on the targeted chromosome were often counteracted by forces from kinetochore-attached microtubules. This tug of war resulted in chromosome-specific segregation errors during anaphase, and revealed that spindle forces can heavily stretch chromosomal arms. Using chromosome-specific FISH and single-cell whole genome sequencing, we established that motor-induced mis-segregations result in specific arm-level, and to a lesser extent, whole chromosome aneuploidies, after a single cell division. Our kinesin-based strategy to manipulate individual mitotic chromosomes opens up the possibility to investigate the immediate cellular responses to specific (arm level) aneuploidies in different cell types; an important step towards understanding how recurrent aneuploidy patterns arise in different cancer types.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 20, 2022.
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A motor-based approach to induce chromosome-specific mis-segregations in human cells
My Anh Truong, Paula Cané-Gasull, Sippe G. de Vries, Wilco Nijenhuis, René Wardenaar, Lukas C. Kapitein, Floris Foijer, Susanne M.A. Lens
bioRxiv 2022.04.19.488790; doi: https://doi.org/10.1101/2022.04.19.488790
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A motor-based approach to induce chromosome-specific mis-segregations in human cells
My Anh Truong, Paula Cané-Gasull, Sippe G. de Vries, Wilco Nijenhuis, René Wardenaar, Lukas C. Kapitein, Floris Foijer, Susanne M.A. Lens
bioRxiv 2022.04.19.488790; doi: https://doi.org/10.1101/2022.04.19.488790

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