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Engineered gene circuits with reinforcement learning allow bacteria to master gameplaying

View ORCID ProfileAdrian Racovita, Satya Prakash, Clenira Varela, Mark Walsh, Roberto Galizi, View ORCID ProfileMark Isalan, View ORCID ProfileAlfonso Jaramillo
doi: https://doi.org/10.1101/2022.04.22.489191
Adrian Racovita
1De novo Synthetic Biology Lab, I2SysBio, CSIC-University of Valencia, Paterna, Spain
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Satya Prakash
2School of Life Sciences, University of Warwick, Coventry, UK
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Clenira Varela
2School of Life Sciences, University of Warwick, Coventry, UK
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Mark Walsh
2School of Life Sciences, University of Warwick, Coventry, UK
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Roberto Galizi
3Centre for Applied Entomology and Parasitology, School of Life Sciences, Keele University, Keele, UK
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Mark Isalan
4Department of Life Sciences, Imperial College London, London, UK
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Alfonso Jaramillo
1De novo Synthetic Biology Lab, I2SysBio, CSIC-University of Valencia, Paterna, Spain
2School of Life Sciences, University of Warwick, Coventry, UK
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  • For correspondence: Alfonso.Jaramillo@synth-bio.org
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Abstract

The engineering of living cells able to learn algorithms by themselves, such as playing board games —a classic challenge for artificial intelligence— will allow complex ecosystems and tissues to be chemically reprogrammed to learn complex decisions. However, current engineered gene circuits encoding decision-making algorithms have failed to implement self-programmability and they require supervised tuning. We show a strategy for engineering gene circuits to rewire themselves by reinforcement learning. We created a scalable general-purpose library of Escherichia coli strains encoding elementary adaptive genetic systems capable of persistently adjusting their relative levels of expression according to their previous behavior. Our strains can learn the mastery of 3×3 board games such as tic-tac-toe, even when starting from a completely ignorant state. We provide a general genetic mechanism for the autonomous learning of decisions in changeable environments.

One-Sentence Summary We propose a scalable strategy to engineer gene circuits capable of autonomously learning decision-making in complex environments.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted April 25, 2022.
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Engineered gene circuits with reinforcement learning allow bacteria to master gameplaying
Adrian Racovita, Satya Prakash, Clenira Varela, Mark Walsh, Roberto Galizi, Mark Isalan, Alfonso Jaramillo
bioRxiv 2022.04.22.489191; doi: https://doi.org/10.1101/2022.04.22.489191
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Engineered gene circuits with reinforcement learning allow bacteria to master gameplaying
Adrian Racovita, Satya Prakash, Clenira Varela, Mark Walsh, Roberto Galizi, Mark Isalan, Alfonso Jaramillo
bioRxiv 2022.04.22.489191; doi: https://doi.org/10.1101/2022.04.22.489191

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