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Multiple modes of substrate hydrolysis-induced covalent modification of strigolactone receptors

View ORCID ProfileJiming Chen, View ORCID ProfileDiwakar Shukla
doi: https://doi.org/10.1101/2022.04.22.489200
Jiming Chen
1Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
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Diwakar Shukla
1Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
2Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
3Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801
4Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801
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Abstract

The strigolactone signaling pathway in plants is unconventional among plant hormone signaling pathways in that the receptor also acts as an enzyme that hydrolyzes the strigolactone substrate. While the canonical view of strigolactone hydrolysis is that it occurs via a nucleophilic attack on the butenolide ring of strigolactone, an alternative Michael addition mechanism in which hydrolysis occurs via a nucleophilic attack on the enol-ether bridge has been proposed. Furthermore, while it is known that a hydrolysis-induced covalent modification to the receptor promotes strigolactone receptor activation, the nature of this covalent modification has been disputed. Here, we employ QM/MM string method simulations to determine the favored pathway of strigolactone hydrolysis and the nature of the covalent modification that acts as a promoter of strigolactone receptor activation. Our simulations show that strigolactone hydrolysis occurs via an acyl substitution pathway beginning with nucleophilic attack on the butenolide ring, which is well corroborated by previous experimental literature. Additionally, we show that multiple possible modes of covalent modifications to the catalytic residues by the butenolide ring are able to form and interconvert, reconciling several seemingly conflicting views on the hydrolysis-induced covalent modification to strigolactone receptors.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/ShuklaGroup/Strigolactone-Hydrolysis

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 22, 2022.
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Multiple modes of substrate hydrolysis-induced covalent modification of strigolactone receptors
Jiming Chen, Diwakar Shukla
bioRxiv 2022.04.22.489200; doi: https://doi.org/10.1101/2022.04.22.489200
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Multiple modes of substrate hydrolysis-induced covalent modification of strigolactone receptors
Jiming Chen, Diwakar Shukla
bioRxiv 2022.04.22.489200; doi: https://doi.org/10.1101/2022.04.22.489200

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