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TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles

Varuni Sarwal, Jaqueline Brito, Serghei Mangul, View ORCID ProfileDavid Koslicki
doi: https://doi.org/10.1101/2022.04.28.489926
Varuni Sarwal
1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
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Jaqueline Brito
2Department of Clinical Pharmacy, University of Southern California, Los Angeles, California, 90089, United States
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Serghei Mangul
2Department of Clinical Pharmacy, University of Southern California, Los Angeles, California, 90089, United States
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David Koslicki
3Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA, USA
4Department of Biology, The Pennsylvania State University, University Park, PA, USA
5Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA
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  • ORCID record for David Koslicki
  • For correspondence: dmk333@psu.edu
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Article Information

doi 
https://doi.org/10.1101/2022.04.28.489926
History 
  • April 29, 2022.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Varuni Sarwal1,
  2. Jaqueline Brito2,
  3. Serghei Mangul2,* and
  4. David Koslicki3,4,5,*,#
  1. 1Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA
  2. 2Department of Clinical Pharmacy, University of Southern California, Los Angeles, California, 90089, United States
  3. 3Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA, USA
  4. 4Department of Biology, The Pennsylvania State University, University Park, PA, USA
  5. 5Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA
  1. ↵#Corresponding author; email: dmk333{at}psu.edu
  1. ↵* These authors jointly supervised this work.

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Posted April 29, 2022.
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TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
Varuni Sarwal, Jaqueline Brito, Serghei Mangul, David Koslicki
bioRxiv 2022.04.28.489926; doi: https://doi.org/10.1101/2022.04.28.489926
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TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
Varuni Sarwal, Jaqueline Brito, Serghei Mangul, David Koslicki
bioRxiv 2022.04.28.489926; doi: https://doi.org/10.1101/2022.04.28.489926

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