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A Novel Y-Shaped, S-O-N-O-S-Bridged Crosslink between Three Residues C22, C44, and K61 Is a Redox Switch of the SARS-CoV-2 Main Protease

Kai S. Yang, Syuan-Ting Alex Kuo, Lauren R. Blankenship, Yan J. Sheng, Banumathi Sankaran, Pingwei Li, Carol A. Fierke, David H. Russell, Xin Yan, Shiqing Xu, Wenshe Ray Liu
doi: https://doi.org/10.1101/2022.04.29.490044
Kai S. Yang
aTexas A&M Drug Discovery Laboratory, Department of Chemistry, Texas A&M University, College Station, TX 77843, USA
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Syuan-Ting Alex Kuo
bDepartment of Chemistry, Texas A&M University, College Station, TX 77843, USA
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Lauren R. Blankenship
aTexas A&M Drug Discovery Laboratory, Department of Chemistry, Texas A&M University, College Station, TX 77843, USA
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Yan J. Sheng
bDepartment of Chemistry, Texas A&M University, College Station, TX 77843, USA
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Banumathi Sankaran
cMolecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
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Pingwei Li
dDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA
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Carol A. Fierke
eDepartment of Biochemistry, Brandeis University, Waltham, MA 02453, USA
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David H. Russell
bDepartment of Chemistry, Texas A&M University, College Station, TX 77843, USA
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Xin Yan
bDepartment of Chemistry, Texas A&M University, College Station, TX 77843, USA
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Shiqing Xu
aTexas A&M Drug Discovery Laboratory, Department of Chemistry, Texas A&M University, College Station, TX 77843, USA
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  • For correspondence: shiqing.xu@tamu.edu wsliu2007@tamu.edu
Wenshe Ray Liu
aTexas A&M Drug Discovery Laboratory, Department of Chemistry, Texas A&M University, College Station, TX 77843, USA
dDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA
fInstitute of Biosciences and Technology and Department of Translational Medical Sciences, College of Medicine, Houston, TX 77030, USA
gDepartment of Molecular and Cellular Medicine, Texas A&M University, College Station, TX 77843, USA
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  • For correspondence: shiqing.xu@tamu.edu wsliu2007@tamu.edu
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ABSTRACT

As the COVID-19 pathogen, SARS-CoV-2 relies on its main protease (MPro) for pathogenesis and replication. During the crystallographic analyses of MPro crystals that were exposed to the air, a uniquely Y-shaped, S-O-N-O-S-bridged posttranslational crosslink that connects three residues C22, C44, and K61 at their side chains was frequently observed. As a novel posttranslational modification, this crosslink serves as a redox switch to regulate the catalytic activity of MPro, a demonstrated drug target of COVID-19. The formation of this linkage leads to a much more opened active site that can be potentially targeted for the development of novel SARS-CoV-2 antivirals. The inactivation of MPro by this crosslink indicates that small molecules that lock MPro in the crosslinked form can be potentially used with other active site-targeting molecules such as paxlovid for synergistic effects in inhibiting the SARS-CoV-2 viral replication. Therefore, this new finding reveals a unique aspect of the SARS-CoV-2 pathogenesis and is potentially paradigm-shifting in our current understanding of the function of MPro and the development of its inhibitors as COVID-19 antivirals.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 29, 2022.
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A Novel Y-Shaped, S-O-N-O-S-Bridged Crosslink between Three Residues C22, C44, and K61 Is a Redox Switch of the SARS-CoV-2 Main Protease
Kai S. Yang, Syuan-Ting Alex Kuo, Lauren R. Blankenship, Yan J. Sheng, Banumathi Sankaran, Pingwei Li, Carol A. Fierke, David H. Russell, Xin Yan, Shiqing Xu, Wenshe Ray Liu
bioRxiv 2022.04.29.490044; doi: https://doi.org/10.1101/2022.04.29.490044
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A Novel Y-Shaped, S-O-N-O-S-Bridged Crosslink between Three Residues C22, C44, and K61 Is a Redox Switch of the SARS-CoV-2 Main Protease
Kai S. Yang, Syuan-Ting Alex Kuo, Lauren R. Blankenship, Yan J. Sheng, Banumathi Sankaran, Pingwei Li, Carol A. Fierke, David H. Russell, Xin Yan, Shiqing Xu, Wenshe Ray Liu
bioRxiv 2022.04.29.490044; doi: https://doi.org/10.1101/2022.04.29.490044

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