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An in situ quantitative map of initial human colorectal HIV transmission

Heeva Baharlou, Nicolas Canete, Erica E Vine, Kevin Hu, Di Yuan, Kerrie J Sandgren, Kirstie M Bertram, Najla Nasr, View ORCID ProfileJake W Rhodes, Martijn P Gosselink, Angelina Di Re, Faizur Reza, Grahame Ctercteko, Nimalan Pathma-Nathan, Geoff Collins, James Toh, Ellis Patrick, Muzlifah A Haniffa, View ORCID ProfileJacob D. Estes, Scott N Byrne, Anthony L Cunningham, Andrew N Harman
doi: https://doi.org/10.1101/2022.04.30.490175
Heeva Baharlou
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Nicolas Canete
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Erica E Vine
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Kevin Hu
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Di Yuan
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Kerrie J Sandgren
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Kirstie M Bertram
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Najla Nasr
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Jake W Rhodes
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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  • ORCID record for Jake W Rhodes
Martijn P Gosselink
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
3Department of Colorectal Surgery, Westmead Hospital, Westmead NSW 2145, Australia
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Angelina Di Re
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
3Department of Colorectal Surgery, Westmead Hospital, Westmead NSW 2145, Australia
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Faizur Reza
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
3Department of Colorectal Surgery, Westmead Hospital, Westmead NSW 2145, Australia
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Grahame Ctercteko
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
3Department of Colorectal Surgery, Westmead Hospital, Westmead NSW 2145, Australia
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Nimalan Pathma-Nathan
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
3Department of Colorectal Surgery, Westmead Hospital, Westmead NSW 2145, Australia
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Geoff Collins
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
3Department of Colorectal Surgery, Westmead Hospital, Westmead NSW 2145, Australia
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James Toh
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
3Department of Colorectal Surgery, Westmead Hospital, Westmead NSW 2145, Australia
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Ellis Patrick
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
4The University of Sydney, School of Maths and Statistics, Faculty of Science, Sydney, Australia
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Muzlifah A Haniffa
5Biosciences Institute, The University of Newcastle, Newcastle upon Tyne, UK
6Wellcome Sanger Institute, Hinxton, UK
7Department of Dermatology and NIHR Newcastle Biomedical Research Centre, Newcastle Hospitals NHS Foundation Trust, Newcastle upon Tyne, UK
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Jacob D. Estes
8Vaccine & Gene Therapy Institute, Oregon Health & Science University, Portland, OR, USA
9Division of Pathobiology & Immunology, Oregon National Primate Research Center, Oregon Health & Science University, Portland, OR, USA
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Scott N Byrne
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Anthony L Cunningham
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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Andrew N Harman
1Centre for Virus Research, The Westmead Institute for Medical Research, 176 Hawkesbury Road, Westmead, NSW 2145 Australia
2The University of Sydney, School of Medical Sciences, Faculty of Medicine and Health Sydney, Australia
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  • For correspondence: andrew.harman@sydney.edu.au
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Abstract

The initial immune response to HIV is critical in determining transmission. However, due to technical limitations we still do not have a comparative map of early mucosal transmission events. We combined RNAscope, cyclic-immunofluorescence and novel image analysis tools to quantify HIV transmission dynamics in intact human colorectal tissue. We mapped HIV enrichment to mucosal dendritic cells (DC) and submucosal macrophages, but not CD4+ T-cells, the primary targets of downstream infection. DCs appeared to funnel virus to lymphoid aggregates which acted as early sanctuaries of high viral titres whilst facilitating HIV passage to the submucosa. Finally, HIV entry induced rapid recruitment and clustering of target cells, facilitating DC and macrophage mediated HIV transfer and enhanced infection of CD4+ T-cells. These data demonstrate a rapid response to HIV structured to maximise the likelihood of mucosal infection, and provide a framework for in situ studies of host pathogen interactions and immune mediated pathologies.

Highlights

  • - in situ quantification of host cellular microenvironment response to pathogen invasion in human colorectal tissue.

  • - HIV first localises to mucosal DCs and submucosal macrophages, but not CD4+ T cells.

  • - Viral enrichment first occurs in lymphoid aggregates which is associated with passage into the submucosa.

  • - Early localisation of HIV to CD4+ T cells is associated with interactions with DCs and macrophages.

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Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted May 01, 2022.
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An in situ quantitative map of initial human colorectal HIV transmission
Heeva Baharlou, Nicolas Canete, Erica E Vine, Kevin Hu, Di Yuan, Kerrie J Sandgren, Kirstie M Bertram, Najla Nasr, Jake W Rhodes, Martijn P Gosselink, Angelina Di Re, Faizur Reza, Grahame Ctercteko, Nimalan Pathma-Nathan, Geoff Collins, James Toh, Ellis Patrick, Muzlifah A Haniffa, Jacob D. Estes, Scott N Byrne, Anthony L Cunningham, Andrew N Harman
bioRxiv 2022.04.30.490175; doi: https://doi.org/10.1101/2022.04.30.490175
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An in situ quantitative map of initial human colorectal HIV transmission
Heeva Baharlou, Nicolas Canete, Erica E Vine, Kevin Hu, Di Yuan, Kerrie J Sandgren, Kirstie M Bertram, Najla Nasr, Jake W Rhodes, Martijn P Gosselink, Angelina Di Re, Faizur Reza, Grahame Ctercteko, Nimalan Pathma-Nathan, Geoff Collins, James Toh, Ellis Patrick, Muzlifah A Haniffa, Jacob D. Estes, Scott N Byrne, Anthony L Cunningham, Andrew N Harman
bioRxiv 2022.04.30.490175; doi: https://doi.org/10.1101/2022.04.30.490175

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