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The transcription factor RUNX2 drives the generation of human NK cells and promotes tissue residency

Sigrid Wahlen, Filip Matthijssens, Wouter Van Loocke, Sylvie Taveirne, Laura Kiekens, Eva Persyn, Els van Ammel, Zenzi De Vos, Stijn De Munter, Patrick Matthys, Filip Van Nieuwerburgh, Tom Taghon, Bart Vandekerckhove, Pieter Van Vlierberghe, Georges Leclercq
doi: https://doi.org/10.1101/2022.05.02.490285
Sigrid Wahlen
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Filip Matthijssens
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
3Department of Biomolecular Medicine, Ghent University, Ghent, Belgium
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Wouter Van Loocke
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
3Department of Biomolecular Medicine, Ghent University, Ghent, Belgium
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Sylvie Taveirne
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Laura Kiekens
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Eva Persyn
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Els van Ammel
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Zenzi De Vos
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Stijn De Munter
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Patrick Matthys
4Laboratory of Immunobiology, Rega Institute for Medical Research, Department of Microbiology, Immunology and Transplantation, K.U. Leuven, Leuven, Belgium
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Filip Van Nieuwerburgh
5Department of Pharmaceutics, Ghent University, Ghent Belgium
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Tom Taghon
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Bart Vandekerckhove
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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Pieter Van Vlierberghe
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
3Department of Biomolecular Medicine, Ghent University, Ghent, Belgium
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Georges Leclercq
1Department of Diagnostic Sciences, Laboratory of Experimental Immunology, Ghent University, Ghent Belgium
2Cancer Research Institute Ghent (CRIG), Ghent, Belgium
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  • For correspondence: [email protected]
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ABSTRACT

NK cells are innate lymphocytes that eliminate virus-infected and cancer cells by cytotoxicity and cytokine secretion. In addition to circulating NK cells, distinct tissue-resident NK subsets have been identified in various organs. Although transcription factors regulating NK cell development and function have been extensively studied in mice, the role of RUNX2 in these processes has not been investigated, neither in mice nor in human. Here, by manipulating RUNX2 expression with either knockdown or overexpression in human hematopoietic stem cell-based NK cell differentiation cultures, combined with transcriptomic and ChIP-sequencing analyses, we established that RUNX2 drives the generation of NK cells, possibly through induction of IL-2Rβ expression in NK progenitor cells. Importantly, RUNX2 promotes tissue residency in human NK cells. Our findings have the potential to improve existing NK cell-based cancer therapies and can impact research fields beyond NK cell biology, since tissue-resident subsets have also been described in other lymphocyte subpopulations.

Competing Interest Statement

The authors have declared no competing interest.

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Posted May 02, 2022.
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The transcription factor RUNX2 drives the generation of human NK cells and promotes tissue residency
Sigrid Wahlen, Filip Matthijssens, Wouter Van Loocke, Sylvie Taveirne, Laura Kiekens, Eva Persyn, Els van Ammel, Zenzi De Vos, Stijn De Munter, Patrick Matthys, Filip Van Nieuwerburgh, Tom Taghon, Bart Vandekerckhove, Pieter Van Vlierberghe, Georges Leclercq
bioRxiv 2022.05.02.490285; doi: https://doi.org/10.1101/2022.05.02.490285
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The transcription factor RUNX2 drives the generation of human NK cells and promotes tissue residency
Sigrid Wahlen, Filip Matthijssens, Wouter Van Loocke, Sylvie Taveirne, Laura Kiekens, Eva Persyn, Els van Ammel, Zenzi De Vos, Stijn De Munter, Patrick Matthys, Filip Van Nieuwerburgh, Tom Taghon, Bart Vandekerckhove, Pieter Van Vlierberghe, Georges Leclercq
bioRxiv 2022.05.02.490285; doi: https://doi.org/10.1101/2022.05.02.490285

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