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FAIRsoft - A practical implementation of FAIR principles for research software

View ORCID ProfileEva Martín del Pico, View ORCID ProfileJosep Lluis Gelpi, View ORCID ProfileSalvador Capella-Gutiérrez
doi: https://doi.org/10.1101/2022.05.04.490563
Eva Martín del Pico
1Barcelona Supercomputing Center
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Josep Lluis Gelpi
2University of Barcelona
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Salvador Capella-Gutiérrez
3Barcelona Supercomputing Center (BSC)
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  • For correspondence: salvador.capella@bsc.es
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Abstract

Software plays a crucial and growing role in research. Unfortunately, the computational component in Life Sciences research is challenging to reproduce and verify most of the time. It could be undocumented, opaque, may even contain unknown errors that affect the outcome, or be directly unavailable, and impossible to use by others. These issues are detrimental to the overall quality of scientific research. One step to address this problem is the formulation of principles that research software in the domain should meet to ensure its quality and sustainability, resembling the FAIR (Findable, Accessible, Interoperable and Reusable) Data Principles. Within the ELIXIR infrastructure, OpenEBench aims to be an open platform providing both support for scientific benchmarking and an active observatory of software quality for the universe of Life Sciences research software. We present our initial proposal to instantiate a FAIR-like framework for assessing software quality as the first step toward the implementation of such an observatory in OpenEBench.

Supplementary Material: FAIRsoft - Supplementary materials FAIRsoft.SupplementaryTables FAIRsoft.SupplementaryTables-Landscape

Other Figures: figures draft

Repository: https://gitlab.bsc.es/inb/elixir/software-observatory/FAIRsoft_ETL

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Figure 3 updated: license files have been included in the analysis and software versions have been classified as "Semantic Versioning" using the same strict criteria used to calculate the related FAIRsoft indicator. These changes make the results shown in Figures 2 and 3 fully consistent. Figure 2 updated: percentage labels in Figure 2 have been updated.

  • https://gitlab.bsc.es/inb/elixir/software-observatory/FAIRsoft_ETL

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted October 10, 2022.
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FAIRsoft - A practical implementation of FAIR principles for research software
Eva Martín del Pico, Josep Lluis Gelpi, Salvador Capella-Gutiérrez
bioRxiv 2022.05.04.490563; doi: https://doi.org/10.1101/2022.05.04.490563
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FAIRsoft - A practical implementation of FAIR principles for research software
Eva Martín del Pico, Josep Lluis Gelpi, Salvador Capella-Gutiérrez
bioRxiv 2022.05.04.490563; doi: https://doi.org/10.1101/2022.05.04.490563

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