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Actin nano-architecture of phagocytic podosomes

View ORCID ProfileJ. Cody Herron, Shiqiong Hu, Takashi Watanabe, Ana T. Nogueira, Bei Liu, Megan Kern, Jesse Aaron, Aaron Taylor, Michael Pablo, Teng-Leong Chew, Timothy C. Elston, View ORCID ProfileKlaus M. Hahn
doi: https://doi.org/10.1101/2022.05.04.490675
J. Cody Herron
1Curriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, US
2Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, US
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  • ORCID record for J. Cody Herron
Shiqiong Hu
3Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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Takashi Watanabe
3Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
4Cancer Center Division of Gene Regulation, Fujita Health University, Toyoake, Japan
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Ana T. Nogueira
3Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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Bei Liu
3Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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Megan Kern
3Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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Jesse Aaron
5Advanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA
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Aaron Taylor
5Advanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA
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Michael Pablo
6Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
7Program in Molecular and Cellular Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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Teng-Leong Chew
5Advanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA
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Timothy C. Elston
1Curriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, US
2Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, US
3Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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  • For correspondence: telston@med.unc.edu khahn@med.unc.edu
Klaus M. Hahn
2Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, US
3Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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  • For correspondence: telston@med.unc.edu khahn@med.unc.edu
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Abstract

Podosomes are actin-enriched adhesion structures important for multiple cellular processes, including migration, bone remodeling, and phagocytosis. Here, we characterized the structure and organization of phagocytic podosomes using interferometric photoactivated localization microscopy (iPALM), a super-resolution microscopy technique capable of 15-20 nm resolution, together with structured illumination microscopy (SIM) and localization-based superresolution microscopy. Phagocytic podosomes were observed during frustrated phagocytosis, a model in which cells attempt to engulf micro-patterned IgG antibodies. For circular patterns, this resulted in regular arrays of podosomes with well-defined geometry. Using persistent homology, we developed a pipeline for semi-automatic identification and measurement of podosome features. These studies revealed an “hourglass” shape of the podosome actin core, a protruding “knob” at the bottom of the core, and two actin networks extending from the core. Additionally, the distributions of paxillin, talin, myosin II, α-actinin, cortactin, and microtubules relative to actin were characterized.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted May 05, 2022.
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Actin nano-architecture of phagocytic podosomes
J. Cody Herron, Shiqiong Hu, Takashi Watanabe, Ana T. Nogueira, Bei Liu, Megan Kern, Jesse Aaron, Aaron Taylor, Michael Pablo, Teng-Leong Chew, Timothy C. Elston, Klaus M. Hahn
bioRxiv 2022.05.04.490675; doi: https://doi.org/10.1101/2022.05.04.490675
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Actin nano-architecture of phagocytic podosomes
J. Cody Herron, Shiqiong Hu, Takashi Watanabe, Ana T. Nogueira, Bei Liu, Megan Kern, Jesse Aaron, Aaron Taylor, Michael Pablo, Teng-Leong Chew, Timothy C. Elston, Klaus M. Hahn
bioRxiv 2022.05.04.490675; doi: https://doi.org/10.1101/2022.05.04.490675

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