Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Automated systematic evaluation of cryo-EM specimens with SmartScope

View ORCID ProfileJonathan Bouvette, View ORCID ProfileQinwen Huang, View ORCID ProfileAmanda A. Riccio, View ORCID ProfileWilliam C. Copeland, View ORCID ProfileAlberto Bartesaghi, View ORCID ProfileMario J. Borgnia
doi: https://doi.org/10.1101/2022.05.05.490801
Jonathan Bouvette
1Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC, 27709, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jonathan Bouvette
Qinwen Huang
2Department of Computer Science, Duke University, Durham, NC, 27708, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Qinwen Huang
Amanda A. Riccio
1Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC, 27709, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Amanda A. Riccio
William C. Copeland
1Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC, 27709, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for William C. Copeland
Alberto Bartesaghi
2Department of Computer Science, Duke University, Durham, NC, 27708, USA
3Department of Biochemistry, Duke University School of Medicine, Durham, NC, 27708, USA
4Department of Electrical and Computer Engineering, Duke University, Durham, NC, 27708, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Alberto Bartesaghi
  • For correspondence: mario.borgnia2@nih.gov alberto.bartesaghi@duke.edu
Mario J. Borgnia
1Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC, 27709, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Mario J. Borgnia
  • For correspondence: mario.borgnia2@nih.gov alberto.bartesaghi@duke.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Data/Code
  • Preview PDF
Loading

Article Information

doi 
https://doi.org/10.1101/2022.05.05.490801
History 
  • May 6, 2022.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license.

Author Information

  1. Jonathan Bouvette1,#,
  2. Qinwen Huang2,#,
  3. Amanda A. Riccio1,
  4. William C. Copeland1,
  5. Alberto Bartesaghi2,3,4,* and
  6. Mario J. Borgnia1,*
  1. 1Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, Research Triangle Park, NC, 27709, USA
  2. 2Department of Computer Science, Duke University, Durham, NC, 27708, USA
  3. 3Department of Biochemistry, Duke University School of Medicine, Durham, NC, 27708, USA
  4. 4Department of Electrical and Computer Engineering, Duke University, Durham, NC, 27708, USA
  1. ↵*Co-corresponding authors: Mario J. Borgnia and Alberto Bartesaghi, Email:
    mario.borgnia2{at}nih.gov, alberto.bartesaghi{at}duke.edu
  1. ↵# These authors contributed equally

  2. Author Contributions: J.B. and M.J.B. developed and implemented SmartScope, Q.H. and A.B. developed and implemented the AI detection and classification for SmartScope. A.A.R. and W.C.C. developed the POLG2 project, including the cloning and purification of the protein. A.A.R. prepared specimens, J.B. and A.R. screened the specimens and collected data. A.A.R. did the data analysis. J.B., Q.H., M.J.B and A.B. wrote the paper, J.B., Q.H. and A.A.R. prepared the figures, and J.B., M.J.B. and A.B. conceived the project.

Back to top
PreviousNext
Posted May 06, 2022.
Download PDF

Supplementary Material

Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Automated systematic evaluation of cryo-EM specimens with SmartScope
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Automated systematic evaluation of cryo-EM specimens with SmartScope
Jonathan Bouvette, Qinwen Huang, Amanda A. Riccio, William C. Copeland, Alberto Bartesaghi, Mario J. Borgnia
bioRxiv 2022.05.05.490801; doi: https://doi.org/10.1101/2022.05.05.490801
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Automated systematic evaluation of cryo-EM specimens with SmartScope
Jonathan Bouvette, Qinwen Huang, Amanda A. Riccio, William C. Copeland, Alberto Bartesaghi, Mario J. Borgnia
bioRxiv 2022.05.05.490801; doi: https://doi.org/10.1101/2022.05.05.490801

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Biophysics
Subject Areas
All Articles
  • Animal Behavior and Cognition (4116)
  • Biochemistry (8820)
  • Bioengineering (6522)
  • Bioinformatics (23469)
  • Biophysics (11798)
  • Cancer Biology (9216)
  • Cell Biology (13327)
  • Clinical Trials (138)
  • Developmental Biology (7440)
  • Ecology (11417)
  • Epidemiology (2066)
  • Evolutionary Biology (15160)
  • Genetics (10442)
  • Genomics (14050)
  • Immunology (9176)
  • Microbiology (22169)
  • Molecular Biology (8817)
  • Neuroscience (47590)
  • Paleontology (350)
  • Pathology (1429)
  • Pharmacology and Toxicology (2492)
  • Physiology (3733)
  • Plant Biology (8083)
  • Scientific Communication and Education (1437)
  • Synthetic Biology (2221)
  • Systems Biology (6039)
  • Zoology (1254)