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A glutamine-based single ɑ-helix scaffold to target globular proteins

View ORCID ProfileA. Escobedo, View ORCID ProfileJ. Piccirillo, View ORCID ProfileJ. Aranda, View ORCID ProfileT. Diercks, View ORCID ProfileB. Topal, View ORCID ProfileM. Biesaga, View ORCID ProfileL. Staby, View ORCID ProfileB. B. Kragelund, View ORCID ProfileJ. García, View ORCID ProfileO. Millet, View ORCID ProfileM. Orozco, View ORCID ProfileM. Coles, View ORCID ProfileR. Crehuet, View ORCID ProfileX. Salvatella
doi: https://doi.org/10.1101/2022.05.06.490931
A. Escobedo
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
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  • For correspondence: albert.escobedo@crg.eu xavier.salvatella@irbbarcelona.org
J. Piccirillo
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
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J. Aranda
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
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T. Diercks
2CIC bioGUNE, Bizkaia, Science and Technology Park bld 801A, 48160 Derio, Bizkaia, Spain
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B. Topal
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
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M. Biesaga
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
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L. Staby
3REPIN and Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, Ole Maaloes Vej 5, University of Copenhagen, DK-2200 Copenhagen N, Denmark
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B. B. Kragelund
3REPIN and Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, Ole Maaloes Vej 5, University of Copenhagen, DK-2200 Copenhagen N, Denmark
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J. García
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
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O. Millet
2CIC bioGUNE, Bizkaia, Science and Technology Park bld 801A, 48160 Derio, Bizkaia, Spain
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M. Orozco
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
4Department of Biochemistry and Biomedicine, University of Barcelona, Avinguda Diagonal 645, 08028 Barcelona, Spain
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M. Coles
5Department of Protein Evolution, Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tubingen, Germany
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R. Crehuet
6CSIC-Institute for Advanced Chemistry of Catalonia (IQAC), Jordi Girona 18-26, 08034 Barcelona, Spain
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X. Salvatella
1Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain
7ICREA, Passeig Lluís Companys 23, 08010, Barcelona, Spain
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  • For correspondence: albert.escobedo@crg.eu xavier.salvatella@irbbarcelona.org
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Abstract

The binding of intrinsically disordered proteins to globular ones often requires the folding of motifs into ɑ-helices. These interactions offer opportunities for therapeutic intervention but their modulation with small molecules is challenging because they bury large surfaces. Linear peptides that display the residues that are key for binding can be targeted to globular proteins when they form stable helices, which in most cases requires their chemical modification. Here we present rules to design peptides that fold into single ɑ-helices by instead concatenating glutamine side chain to main chain hydrogen bonds recently discovered in polyglutamine helices. The resulting peptides are uncharged, contain only natural amino acids, and their sequences can be optimized to interact with specific targets. Our results provide design rules to obtain single ɑ-helices for a wide range of applications in protein engineering and drug design.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 06, 2022.
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A glutamine-based single ɑ-helix scaffold to target globular proteins
A. Escobedo, J. Piccirillo, J. Aranda, T. Diercks, B. Topal, M. Biesaga, L. Staby, B. B. Kragelund, J. García, O. Millet, M. Orozco, M. Coles, R. Crehuet, X. Salvatella
bioRxiv 2022.05.06.490931; doi: https://doi.org/10.1101/2022.05.06.490931
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A glutamine-based single ɑ-helix scaffold to target globular proteins
A. Escobedo, J. Piccirillo, J. Aranda, T. Diercks, B. Topal, M. Biesaga, L. Staby, B. B. Kragelund, J. García, O. Millet, M. Orozco, M. Coles, R. Crehuet, X. Salvatella
bioRxiv 2022.05.06.490931; doi: https://doi.org/10.1101/2022.05.06.490931

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