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Ultrastructure Expansion Microscopy reveals the nanoscale cellular architecture of budding and fission yeast

Kerstin Hinterndorfer, Marine. H. Laporte, Felix Mikus, Lucas Tafur Petrozzi, Clélia Bourgoint, Manoel Prouteau, View ORCID ProfileGautam Dey, Robbie Loewith, View ORCID ProfilePaul Guichard, View ORCID ProfileVirginie Hamel
doi: https://doi.org/10.1101/2022.05.16.492060
Kerstin Hinterndorfer
1Centriole Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
2Loewith Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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Marine. H. Laporte
1Centriole Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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Felix Mikus
3Cell Biology and Biophysics, European Molecular Biology Laboratory, Heidelberg, Germany
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Lucas Tafur Petrozzi
2Loewith Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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Clélia Bourgoint
2Loewith Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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Manoel Prouteau
2Loewith Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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Gautam Dey
3Cell Biology and Biophysics, European Molecular Biology Laboratory, Heidelberg, Germany
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  • ORCID record for Gautam Dey
  • For correspondence: gautam.dey@embl.de Robbie.loewith@unige.ch virginie.hamel@unige.ch paul.guichard@unige.ch
Robbie Loewith
2Loewith Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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  • For correspondence: gautam.dey@embl.de Robbie.loewith@unige.ch virginie.hamel@unige.ch paul.guichard@unige.ch
Paul Guichard
1Centriole Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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  • ORCID record for Paul Guichard
  • For correspondence: gautam.dey@embl.de Robbie.loewith@unige.ch virginie.hamel@unige.ch paul.guichard@unige.ch
Virginie Hamel
1Centriole Lab, Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland
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  • ORCID record for Virginie Hamel
  • For correspondence: gautam.dey@embl.de Robbie.loewith@unige.ch virginie.hamel@unige.ch paul.guichard@unige.ch
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Abstract

The budding yeast Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe have served as invaluable model organisms to study various fundamental and highly conserved cellular processes. While super-resolution (SR) microscopy has in recent years paved the way to a better understanding of the spatial organization of molecules in cells, its wide use in yeast models has remained limited due to the specific know-how and specialized instrumentation required, contrasted with the relative ease of endogenous tagging and live cell fluorescence microscopy in these systems. To facilitate SR microscopy in yeasts, we have extended the ultrastructure expansion microscopy (U-ExM) method to both S. cerevisiae and S. pombe, enabling 4-fold isotropic expansion in both systems. We demonstrate here that U-ExM allows the nanoscale imaging of the microtubule cytoskeleton and its associated spindle pole body (SPB), notably unveiling a conserved Sfi1p/Cdc31p spatial organization on the appendage bridge structure. In S. pombe, we validate the method by quantifying the homeostatic regulation of nuclear pore complex (NPC) number through the cell cycle. Combined with pan-labelling (NHS ester), which provides a global cellular context, U-ExM unveils the subcellular organization of the eukaryote yeast models S. cerevisiae and S. pombe. This easy-to-implement imaging with conventional microscopes provides nanoscale resolution and adds a powerful new method to the already extensive yeast toolbox.

Competing Interest Statement

The authors have declared no competing interest.

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Posted May 16, 2022.
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Ultrastructure Expansion Microscopy reveals the nanoscale cellular architecture of budding and fission yeast
Kerstin Hinterndorfer, Marine. H. Laporte, Felix Mikus, Lucas Tafur Petrozzi, Clélia Bourgoint, Manoel Prouteau, Gautam Dey, Robbie Loewith, Paul Guichard, Virginie Hamel
bioRxiv 2022.05.16.492060; doi: https://doi.org/10.1101/2022.05.16.492060
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Ultrastructure Expansion Microscopy reveals the nanoscale cellular architecture of budding and fission yeast
Kerstin Hinterndorfer, Marine. H. Laporte, Felix Mikus, Lucas Tafur Petrozzi, Clélia Bourgoint, Manoel Prouteau, Gautam Dey, Robbie Loewith, Paul Guichard, Virginie Hamel
bioRxiv 2022.05.16.492060; doi: https://doi.org/10.1101/2022.05.16.492060

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