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Resolution doubling in light-sheet microscopy via oblique plane structured illumination

Bingying Chen, Bo-Jui Chang, Philippe Roudot, Felix Zhou, Etai Sapoznik, Madeleine Marlar-Pavey, James B. Hayes, Peter T. Brown, Chih-Wei Zeng, Talley Lambert, View ORCID ProfileJonathan R. Friedman, View ORCID ProfileChun-Li Zhang, Dylan T. Burnette, View ORCID ProfileDouglas P. Shepherd, Kevin M. Dean, Reto P. Fiolka
doi: https://doi.org/10.1101/2022.05.19.492671
Bingying Chen
1Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA
2Cecil H. and Ida Green Center for Systems Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Bo-Jui Chang
1Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA
2Cecil H. and Ida Green Center for Systems Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Philippe Roudot
4Aix Marseille University, CNRS, Centrale Marseille, I2M, Turing Centre for Living Systems, Marseille, France
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Felix Zhou
1Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA
2Cecil H. and Ida Green Center for Systems Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Etai Sapoznik
1Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Madeleine Marlar-Pavey
3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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James B. Hayes
5Department of Cell and Developmental Biology, Vanderbilt Medical Center, University of Vanderbilt, Nashville, TN, USA
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Peter T. Brown
6Center for Biological Physics and Department of Physics, Arizona State University, Tempe, AZ, USA
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Chih-Wei Zeng
7Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Talley Lambert
8Department of Cell Biology, Harvard Medical School, Boston, MA, USA
9Department of Systems Biology, Harvard Medical School, Boston, MA, USA
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Jonathan R. Friedman
3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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  • ORCID record for Jonathan R. Friedman
Chun-Li Zhang
7Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Dylan T. Burnette
5Department of Cell and Developmental Biology, Vanderbilt Medical Center, University of Vanderbilt, Nashville, TN, USA
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Douglas P. Shepherd
6Center for Biological Physics and Department of Physics, Arizona State University, Tempe, AZ, USA
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Kevin M. Dean
1Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA
2Cecil H. and Ida Green Center for Systems Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Reto P. Fiolka
1Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA
2Cecil H. and Ida Green Center for Systems Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
3Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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  • For correspondence: reto.fiolka@utsouthwestern.edu
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Abstract

Structured illumination microscopy (SIM) doubles the spatial resolution of a fluorescence microscope without requiring high laser powers or specialized fluorophores. However, the excitation of out-of-focus fluorescence can accelerate photobleaching and phototoxicity. In contrast, light-sheet fluorescence microscopy (LSFM) largely avoids exciting out-of-focus fluorescence, thereby enabling volumetric imaging with low photo-bleaching and intrinsic optical sectioning. Combining SIM with LSFM would enable gentle 3D imaging at doubled resolution. However, multiple orientations of the illumination pattern, which are needed for isotropic resolution doubling in SIM, are challenging to implement in a light-sheet format. Here we show that multidirectional structured illumination can be implemented in oblique plane microscopy, a LSFM technique that uses a single objective for excitation and detection, in a straightforward manner. We demonstrate isotropic lateral resolution below 150nm, combined with lower photo-toxicity compared to traditional SIM systems and volumetric acquisition speed exceeding 1Hz.

Competing Interest Statement

R.F., B.C. and B.J.C. have filed a patent for the image rotator and applications to microscopy.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 20, 2022.
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Resolution doubling in light-sheet microscopy via oblique plane structured illumination
Bingying Chen, Bo-Jui Chang, Philippe Roudot, Felix Zhou, Etai Sapoznik, Madeleine Marlar-Pavey, James B. Hayes, Peter T. Brown, Chih-Wei Zeng, Talley Lambert, Jonathan R. Friedman, Chun-Li Zhang, Dylan T. Burnette, Douglas P. Shepherd, Kevin M. Dean, Reto P. Fiolka
bioRxiv 2022.05.19.492671; doi: https://doi.org/10.1101/2022.05.19.492671
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Resolution doubling in light-sheet microscopy via oblique plane structured illumination
Bingying Chen, Bo-Jui Chang, Philippe Roudot, Felix Zhou, Etai Sapoznik, Madeleine Marlar-Pavey, James B. Hayes, Peter T. Brown, Chih-Wei Zeng, Talley Lambert, Jonathan R. Friedman, Chun-Li Zhang, Dylan T. Burnette, Douglas P. Shepherd, Kevin M. Dean, Reto P. Fiolka
bioRxiv 2022.05.19.492671; doi: https://doi.org/10.1101/2022.05.19.492671

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