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Hetero-oligomerization of TDP-43 carboxy-terminal fragments with cellular proteins contributes to proteotoxicity

View ORCID ProfileAkira Kitamura, View ORCID ProfileAi Fujimoto, View ORCID ProfileRei Kawashima, View ORCID ProfileYidan Lyu, Kanami Moriya, Ayumi Kurata, Kazuho Takahashi, Reneé Brielmann, Laura C. Bott, View ORCID ProfileRichard I. Morimoto, View ORCID ProfileMasataka Kinjo
doi: https://doi.org/10.1101/2022.05.22.493003
Akira Kitamura
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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  • For correspondence: akita@sci.hokudai.ac.jp
Ai Fujimoto
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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Rei Kawashima
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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Yidan Lyu
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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Kanami Moriya
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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Ayumi Kurata
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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Kazuho Takahashi
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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Reneé Brielmann
2Department of Molecular and Cell Biology and Biochemistry, Rice Institute for Biomedical Research, Northwestern University, Evanston, IL, USA
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Laura C. Bott
2Department of Molecular and Cell Biology and Biochemistry, Rice Institute for Biomedical Research, Northwestern University, Evanston, IL, USA
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Richard I. Morimoto
2Department of Molecular and Cell Biology and Biochemistry, Rice Institute for Biomedical Research, Northwestern University, Evanston, IL, USA
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Masataka Kinjo
1Laboratory of Molecular Cell Dynamics, Faculty of Advanced Life Science, Hokkaido University, Sapporo, Japan
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  • ORCID record for Masataka Kinjo
  • For correspondence: akita@sci.hokudai.ac.jp
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Abstract

Carboxy terminal fragments (CTFs) of TDP-43 contain an intrinsically disordered region (IDR) and form cytoplasmic condensates containing amyloid fibrils. Such condensates are toxic and associated with pathogenicity in several neurodegenerative disorders, including amyotrophic lateral sclerosis and frontotemporal lobar degeneration. However, the molecular details of how the domain of TDP-43 CTFs leads to condensation and cytotoxicity remain elusive. Here, we show that truncated RNA/DNA-recognition motif (RRM) at the N-terminus of TDP-43 CTFs is assembled and leads to the structural transition of the IDR, whereas the IDR itself of TDP-43 CTFs is difficult to assemble even if they are proximate intermolecularly. Hetero-oligomers of TDP-43 CTFs that have recruited other proteins that are essential for proteostasis into low mobile condensates are more toxic than homo-oligomers inside highly mobile condensates, implicating loss-of-function of the endogenous proteins by such oligomers, not necessarily the condensates, is associated with cytotoxicity. Furthermore, such toxicity of TDP-43 CTFs was cell-nonautonomously affected in the nematodes. We speculate that the misfolding and oligomeric characteristics of the truncated RRM at the N-terminus of TDP-43 CTFs define their condensation properties and toxicity by implanting and transmitting structures with toxic properties of the truncated RRM into the IDR.

Competing Interest Statement

The authors have declared no competing interest.

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Posted May 23, 2022.
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Hetero-oligomerization of TDP-43 carboxy-terminal fragments with cellular proteins contributes to proteotoxicity
Akira Kitamura, Ai Fujimoto, Rei Kawashima, Yidan Lyu, Kanami Moriya, Ayumi Kurata, Kazuho Takahashi, Reneé Brielmann, Laura C. Bott, Richard I. Morimoto, Masataka Kinjo
bioRxiv 2022.05.22.493003; doi: https://doi.org/10.1101/2022.05.22.493003
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Hetero-oligomerization of TDP-43 carboxy-terminal fragments with cellular proteins contributes to proteotoxicity
Akira Kitamura, Ai Fujimoto, Rei Kawashima, Yidan Lyu, Kanami Moriya, Ayumi Kurata, Kazuho Takahashi, Reneé Brielmann, Laura C. Bott, Richard I. Morimoto, Masataka Kinjo
bioRxiv 2022.05.22.493003; doi: https://doi.org/10.1101/2022.05.22.493003

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