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Predicting recognition between T cell receptors and epitopes using contextualized motifs
View ORCID ProfileEmmi Jokinen, View ORCID ProfileAlexandru Dumitrescu, View ORCID ProfileJani Huuhtanen, View ORCID ProfileVladimir Gligorijević, View ORCID ProfileSatu Mustjoki, View ORCID ProfileRichard Bonneau, View ORCID ProfileMarkus Heinonen, Harri Lähdesmäki
doi: https://doi.org/10.1101/2022.05.23.493034
Emmi Jokinen
1Department of Computer Science, Aalto University, Espoo, 02150, Finland
Alexandru Dumitrescu
1Department of Computer Science, Aalto University, Espoo, 02150, Finland
2Helsinki Institute of Life Science, University of Helsinki, Helsinki, 00014, Finland
Jani Huuhtanen
3Translational Immunology Research program and Department of Clinical Chemistry and Hematology, University of Helsinki, Helsinki, Finland
4Hematology Research Unit Helsinki, Helsinki University Hospital Comprehensive Cancer Center, Helsinki, Finland
Vladimir Gligorijević
5Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation, New York, New York, USA
6Prescient Design, Genentech, New York, New York, USA
Satu Mustjoki
3Translational Immunology Research program and Department of Clinical Chemistry and Hematology, University of Helsinki, Helsinki, Finland
4Hematology Research Unit Helsinki, Helsinki University Hospital Comprehensive Cancer Center, Helsinki, Finland
7iCAN Digital Precision Cancer Medicine Flagship, Helsinki, Finland
Richard Bonneau
5Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation, New York, New York, USA
6Prescient Design, Genentech, New York, New York, USA
8Center for Data Science, New York University, New York, NY 10011, USA
9Courant Institute of Mathematical Sciences, Department of Computer Science, New York University, New York, NY, USA
Markus Heinonen
1Department of Computer Science, Aalto University, Espoo, 02150, Finland
Harri Lähdesmäki
1Department of Computer Science, Aalto University, Espoo, 02150, Finland
Posted May 24, 2022.
Predicting recognition between T cell receptors and epitopes using contextualized motifs
Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Vladimir Gligorijević, Satu Mustjoki, Richard Bonneau, Markus Heinonen, Harri Lähdesmäki
bioRxiv 2022.05.23.493034; doi: https://doi.org/10.1101/2022.05.23.493034
Predicting recognition between T cell receptors and epitopes using contextualized motifs
Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Vladimir Gligorijević, Satu Mustjoki, Richard Bonneau, Markus Heinonen, Harri Lähdesmäki
bioRxiv 2022.05.23.493034; doi: https://doi.org/10.1101/2022.05.23.493034
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