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The complex octoploid Craterostigma genome and tissue-specific mechanisms underlying desiccation tolerance

View ORCID ProfileRobert VanBuren, Ching Man Wai, Valentino Giarola, Milan Župunski, View ORCID ProfileJeremy Pardo, Michael Kalinowski, View ORCID ProfileGuido Grossmann, Dorothea Bartels
doi: https://doi.org/10.1101/2022.05.31.494158
Robert VanBuren
1Department of Horticulture, Michigan State University, East Lansing, MI 48824
2Plant Resilience Institute, Michigan State University, East Lansing, MI 48824
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  • For correspondence: bobvanburen@gmail.com dbartels@uni-bonn.de
Ching Man Wai
1Department of Horticulture, Michigan State University, East Lansing, MI 48824
2Plant Resilience Institute, Michigan State University, East Lansing, MI 48824
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Valentino Giarola
3IMBIO, University of Bonn, Kirschallee 1 D-53115 Bonn, Germany
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Milan Župunski
4Institute of Cell and Interaction Biology, CEPLAS, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany
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Jeremy Pardo
1Department of Horticulture, Michigan State University, East Lansing, MI 48824
2Plant Resilience Institute, Michigan State University, East Lansing, MI 48824
5Department of Plant Biology, Michigan State University, East Lansing, MI 48824
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Michael Kalinowski
1Department of Horticulture, Michigan State University, East Lansing, MI 48824
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Guido Grossmann
4Institute of Cell and Interaction Biology, CEPLAS, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany
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Dorothea Bartels
3IMBIO, University of Bonn, Kirschallee 1 D-53115 Bonn, Germany
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  • For correspondence: bobvanburen@gmail.com dbartels@uni-bonn.de
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Abstract

Resurrection plants can survive prolonged anhydrobiosis, and desiccation tolerance has evolved recurrently across land plants as a common adaptation for survival in regions with seasonal drying. Craterostigma plantagineum was among the first model resurrection plants, and many of the genetic mechanisms underlying desiccation tolerance were discovered in this important system. Here, we analyzed the complex, octoploid Craterostigma (C. plantagineum) genome and surveyed spatial and temporal expression dynamics to identify genetic elements underlying desiccation tolerance. Homeologous genes within the Craterostigma genome have divergent expression profiles, suggesting the subgenomes contribute differently to desiccation tolerance traits. The Craterostigma genome contains almost 200 tandemly duplicated early light induced proteins (ELIPs), a hallmark trait of desiccation tolerance, with massive upregulation under water deficit. We identified a core network of desiccation responsive genes across all tissues but observed almost entirely unique expression dynamics in each tissue during recovery. Roots and leaves have differential responses related to light and photoprotection, autophagy, and nutrient transport, reflecting their divergent functions. Our findings highlight a universal set of likely ancestral desiccation tolerance mechanisms to protect cellular macromolecules under anhydrobiosis, with secondary adaptations related to tissue function.

Competing Interest Statement

The authors have declared no competing interest.

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Posted May 31, 2022.
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The complex octoploid Craterostigma genome and tissue-specific mechanisms underlying desiccation tolerance
Robert VanBuren, Ching Man Wai, Valentino Giarola, Milan Župunski, Jeremy Pardo, Michael Kalinowski, Guido Grossmann, Dorothea Bartels
bioRxiv 2022.05.31.494158; doi: https://doi.org/10.1101/2022.05.31.494158
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The complex octoploid Craterostigma genome and tissue-specific mechanisms underlying desiccation tolerance
Robert VanBuren, Ching Man Wai, Valentino Giarola, Milan Župunski, Jeremy Pardo, Michael Kalinowski, Guido Grossmann, Dorothea Bartels
bioRxiv 2022.05.31.494158; doi: https://doi.org/10.1101/2022.05.31.494158

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