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bHLH heterodimer complex variations shape meristems in Arabidopsis thaliana by affecting target gene specificity

View ORCID ProfileEliana Mor, View ORCID ProfileMarkéta Pernisová, View ORCID ProfileMax Minne, Guillaume Cerutti, Dagmar Ripper, View ORCID ProfileJonah Nolf, Jennifer Andres, View ORCID ProfileLaura Ragni, View ORCID ProfileMatias D. Zurbriggen, View ORCID ProfileBert De Rybel, View ORCID ProfileTeva Vernoux
doi: https://doi.org/10.1101/2022.06.02.494582
Eliana Mor
1Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium
2VIB Centre for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Markéta Pernisová
3Laboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, CNRS, INRAE, INRIA, 69342 Lyon, France
4Functional Genomics and Proteomics, National Centre for Biomolecular Research, Faculty of Science, and Plant Sciences Core Facility, Mendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology (CEITEC), Masaryk University, 62500 Brno, Czechia
6Institute of Synthetic Biology and CEPLAS, Heinrich-Heine-Universität Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
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Max Minne
1Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium
2VIB Centre for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Guillaume Cerutti
3Laboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, CNRS, INRAE, INRIA, 69342 Lyon, France
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Dagmar Ripper
5ZMBP-Center for Plant Molecular Biology, University of Tübingen, Auf der Morgenstelle 32, D-72076 Tübingen, Germany
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Jonah Nolf
1Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium
2VIB Centre for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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Jennifer Andres
6Institute of Synthetic Biology and CEPLAS, Heinrich-Heine-Universität Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
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Laura Ragni
5ZMBP-Center for Plant Molecular Biology, University of Tübingen, Auf der Morgenstelle 32, D-72076 Tübingen, Germany
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Matias D. Zurbriggen
6Institute of Synthetic Biology and CEPLAS, Heinrich-Heine-Universität Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
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  • For correspondence: matias.zurbriggen@uni-duesseldorf.de beryb@psb.vib-ugent.be teva.vernoux@ens-lyon.fr
Bert De Rybel
1Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium
2VIB Centre for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
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  • For correspondence: matias.zurbriggen@uni-duesseldorf.de beryb@psb.vib-ugent.be teva.vernoux@ens-lyon.fr
Teva Vernoux
3Laboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, CNRS, INRAE, INRIA, 69342 Lyon, France
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  • For correspondence: matias.zurbriggen@uni-duesseldorf.de beryb@psb.vib-ugent.be teva.vernoux@ens-lyon.fr
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ABSTRACT

The main regions of cell proliferation in plants are the root and shoot apical meristems during primary growth and the vascular cambia as lateral meristems during secondary thickening. A number of unique regulators have been described in each of these meristems, suggesting that these different meristems might have independently evolved dedicated transcriptional networks to balance cell proliferation. Here, we show that the basic Helix Loop Helix (bHLH) transcription factor complexes formed by TARGET OF MONOPTEROS5 (TMO5), LONESOME HIGHWAY (LHW) and their close homologs are broadly expressed throughout plant development and operate as general regulators of cell proliferation in all meristems. Yet, genetic and expression analyses indicate that these complexes have specific functions in distinct meristems mediated by heterodimer complex variations between members of the TMO5 and LHW subclades. We determine that this is primarily due to their expression domains limiting the possible combinations of heterodimer complexes within a certain meristem, and to a certain extent to the absence of some members in a given meristem. We further demonstrate target gene specificity for heterodimer complexes, suggesting that spatial differences in transcriptional responses through heterodimer diversification allow a common bHLH heterodimer complex module to contribute to the control of cell proliferation in multiple meristems.

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Posted June 05, 2022.
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bHLH heterodimer complex variations shape meristems in Arabidopsis thaliana by affecting target gene specificity
Eliana Mor, Markéta Pernisová, Max Minne, Guillaume Cerutti, Dagmar Ripper, Jonah Nolf, Jennifer Andres, Laura Ragni, Matias D. Zurbriggen, Bert De Rybel, Teva Vernoux
bioRxiv 2022.06.02.494582; doi: https://doi.org/10.1101/2022.06.02.494582
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bHLH heterodimer complex variations shape meristems in Arabidopsis thaliana by affecting target gene specificity
Eliana Mor, Markéta Pernisová, Max Minne, Guillaume Cerutti, Dagmar Ripper, Jonah Nolf, Jennifer Andres, Laura Ragni, Matias D. Zurbriggen, Bert De Rybel, Teva Vernoux
bioRxiv 2022.06.02.494582; doi: https://doi.org/10.1101/2022.06.02.494582

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