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Analysis of SMAD1/5 target genes in a sea anemone reveals ZSWIM4-6 as a novel BMP signaling modulator

View ORCID ProfilePaul Knabl, View ORCID ProfileAlexandra Schauer, Autumn Penecilla Pomreinke, View ORCID ProfileBob Zimmermann, View ORCID ProfileKatherine W. Rogers, View ORCID ProfilePatrick Müller, View ORCID ProfileGrigory Genikhovich
doi: https://doi.org/10.1101/2022.06.03.494682
Paul Knabl
1Department of Neurosciences and Developmental Biology, University of Vienna, Austria
2Vienna Doctoral School of Ecology and Evolution (VDSEE), University of Vienna, Austria
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Alexandra Schauer
1Department of Neurosciences and Developmental Biology, University of Vienna, Austria
5Institute of Science and Technology Austria, Austria
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Autumn Penecilla Pomreinke
3Friedrich Miescher Laboratory of the Max Planck Society, Germany
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Bob Zimmermann
1Department of Neurosciences and Developmental Biology, University of Vienna, Austria
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Katherine W. Rogers
3Friedrich Miescher Laboratory of the Max Planck Society, Germany
6Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, USA
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Patrick Müller
3Friedrich Miescher Laboratory of the Max Planck Society, Germany
4University of Konstanz, Germany
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Grigory Genikhovich
1Department of Neurosciences and Developmental Biology, University of Vienna, Austria
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  • ORCID record for Grigory Genikhovich
  • For correspondence: grigory.genikhovich@univie.ac.at
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Abstract

BMP signaling has a conserved function in patterning the dorsal-ventral body axis in Bilateria and the directive axis in anthozoan cnidarians. So far, cnidarian studies have focused on the role of different BMP signaling network components in regulating pSMAD1/5 gradient formation. Much less is known about the target genes downstream of BMP signaling. To address this, we generated a genome-wide list of direct pSMAD1/5 target genes in the anthozoan Nematostella vectensis, several of which were conserved in Drosophila and Xenopus. Our ChIP-Seq analysis revealed that many of the regulatory molecules with documented bilaterally symmetric expression in Nematostella are directly controlled by BMP signaling. Among the so far uncharacterized BMP-dependent transcription factors and signaling molecules we identified several, whose bilaterally symmetric expression may be indicative of their involvement in secondary axis patterning. One of these molecules, zswim4-6, encodes a novel nuclear modulator of the pSMAD1/5 gradient potentially promoting BMP-dependent gene repression. Strikingly, overexpression of the zebrafish homologue zswim5 suggests that its effect on the pSMAD1/5 gradient is conserved between anthozoan Cnidaria and Bilateria.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted June 03, 2022.
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Analysis of SMAD1/5 target genes in a sea anemone reveals ZSWIM4-6 as a novel BMP signaling modulator
Paul Knabl, Alexandra Schauer, Autumn Penecilla Pomreinke, Bob Zimmermann, Katherine W. Rogers, Patrick Müller, Grigory Genikhovich
bioRxiv 2022.06.03.494682; doi: https://doi.org/10.1101/2022.06.03.494682
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Analysis of SMAD1/5 target genes in a sea anemone reveals ZSWIM4-6 as a novel BMP signaling modulator
Paul Knabl, Alexandra Schauer, Autumn Penecilla Pomreinke, Bob Zimmermann, Katherine W. Rogers, Patrick Müller, Grigory Genikhovich
bioRxiv 2022.06.03.494682; doi: https://doi.org/10.1101/2022.06.03.494682

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