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Protein nanobarcodes enable single-step multiplexed fluorescence imaging

Daniëlle de Jong-Bolm, View ORCID ProfileMohsen Sadeghi, Guobin Bao, Gabriele Klaehn, Merle Hoff, Lucas Mittelmeier, F. Buket Basmanav, View ORCID ProfileFelipe Opazo, View ORCID ProfileFrank Noé, View ORCID ProfileSilvio O. Rizzoli
doi: https://doi.org/10.1101/2022.06.03.494744
Daniëlle de Jong-Bolm
1Department of Neuro- and Sensory physiology, University of Göttingen Medical Center, 37073 Göttingen, Germany
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  • For correspondence: danielle.dejong@med.uni-goettingen.de
Mohsen Sadeghi
2Department of Mathematics and Computer Science, Free University of Berlin, 14195 Berlin, Germany
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Guobin Bao
3Institute of Pharmacology and Toxicology, University Medical Center, Georg-August-University, Göttingen, Germany
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Gabriele Klaehn
1Department of Neuro- and Sensory physiology, University of Göttingen Medical Center, 37073 Göttingen, Germany
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Merle Hoff
1Department of Neuro- and Sensory physiology, University of Göttingen Medical Center, 37073 Göttingen, Germany
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Lucas Mittelmeier
1Department of Neuro- and Sensory physiology, University of Göttingen Medical Center, 37073 Göttingen, Germany
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F. Buket Basmanav
1Department of Neuro- and Sensory physiology, University of Göttingen Medical Center, 37073 Göttingen, Germany
4Campus Laboratory for Advanced Imaging, Microscopy and Spectroscopy, University of Göttingen, 37073 Göttingen, Germany
5Institute of Human Genetics, University of Bonn, Medical Faculty & University Hospital Bonn, 53127 Bonn, Germany
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Felipe Opazo
1Department of Neuro- and Sensory physiology, University of Göttingen Medical Center, 37073 Göttingen, Germany
6Center for Biostructural Imaging of Neurodegeneration (BIN), University of Göttingen Medical Center, 37075 Göttingen, Germany
7NanoTag Biotechnologies GmbH, Rudolf-Wissell-Straße 28a, 37079 Göttingen, Germany
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Frank Noé
2Department of Mathematics and Computer Science, Free University of Berlin, 14195 Berlin, Germany
8Department of Physics, Free University of Berlin, 14195 Berlin, Germany
9Department of Chemistry, Rice University, Houston, TX, USA
10Microsoft Research Lab, Cambridge, UK
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Silvio O. Rizzoli
1Department of Neuro- and Sensory physiology, University of Göttingen Medical Center, 37073 Göttingen, Germany
6Center for Biostructural Imaging of Neurodegeneration (BIN), University of Göttingen Medical Center, 37075 Göttingen, Germany
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Abstract

Multiplexed cellular imaging typically relies on the sequential application of detection probes, such as antibodies or DNA barcodes, which is complex and time-consuming. To address this, we developed here protein nanobarcodes, composed of combinations of epitopes recognized by specific sets of nanobodies. The nanobarcodes are read in a single imaging step, relying on nanobodies conjugated to distinct fluorophores, which enables a precise analysis of large numbers of protein combinations.

Competing Interest Statement

S.O.R. and F.O. are shareholders of NanoTag Biotechnologies GmbH. All other authors declare no potential conflict of interest.

Footnotes

  • ↵* danielle.dejong{at}med.uni-goettingen.de, mohsen.sadeghi{at}fu-berlin.de, srizzol{at}gwdg.de

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted June 04, 2022.
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Protein nanobarcodes enable single-step multiplexed fluorescence imaging
Daniëlle de Jong-Bolm, Mohsen Sadeghi, Guobin Bao, Gabriele Klaehn, Merle Hoff, Lucas Mittelmeier, F. Buket Basmanav, Felipe Opazo, Frank Noé, Silvio O. Rizzoli
bioRxiv 2022.06.03.494744; doi: https://doi.org/10.1101/2022.06.03.494744
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Protein nanobarcodes enable single-step multiplexed fluorescence imaging
Daniëlle de Jong-Bolm, Mohsen Sadeghi, Guobin Bao, Gabriele Klaehn, Merle Hoff, Lucas Mittelmeier, F. Buket Basmanav, Felipe Opazo, Frank Noé, Silvio O. Rizzoli
bioRxiv 2022.06.03.494744; doi: https://doi.org/10.1101/2022.06.03.494744

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