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Dose-dependent nuclear delivery and transcriptional repression with a cell-penetrant MeCP2

Xizi Zhang, Madeline Zoltek, View ORCID ProfileDeepto Mozumdar, View ORCID ProfileAlanna Schepartz
doi: https://doi.org/10.1101/2022.06.03.494754
Xizi Zhang
1Department of Chemistry, University of California, Berkeley, CA 94720
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Madeline Zoltek
2Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720
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Deepto Mozumdar
1Department of Chemistry, University of California, Berkeley, CA 94720
3Department of Chemistry, Yale University, New Haven, CT 06520
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Alanna Schepartz
1Department of Chemistry, University of California, Berkeley, CA 94720
2Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720
4California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720
5Chan Zuckerberg Biohub, San Francisco, CA 94158
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  • For correspondence: schepartz@berkeley.edu
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Abstract

Methyl-CpG-binding-protein 2 (MeCP2) is a nuclear protein expressed in all cell types, especially neurons1. Mutations in the MECP2 gene cause Rett syndrome (RTT), an incurable neurological disorder that disproportionately affects young girls2. Strategies to restore MeCP2 expression phenotypically reverse RTT-like symptoms in male and female MeCP2-deficient mice3–5, suggesting that direct nuclear delivery of functional MeCP2 could restore MeCP2 activity. We report that ZF-tMeCP2, a conjugate of MeCP2(Δaa13-71, 313-484)6 and the cell-permeant mini-protein ZF5.37–11, both binds DNA in a methylation-dependent manner and reaches the nucleus of model cell lines intact at concentrations above 700 nM. When delivered to live cells, ZF-tMeCP2 engages the NCoR/SMRT co-repressor complex and selectively represses transcription from methylated promoters. Efficient nuclear delivery of ZF-tMeCP2 relies on a unique endosomal escape portal provided by HOPS-dependent endosomal fusion. The Tat conjugate of MeCP2 (Tat-tMeCP2), evaluated for comparison, is degraded within the nucleus, is not selective for methylated promoters, and trafficks in a HOPS-independent manner. These results support the feasibility of a HOPS-dependent portal for delivering functional macromolecules to the cell interior using the cell-penetrant mini-protein ZF5.3. Such a strategy could broaden the impact of multiple families of protein-derived therapeutics.

Competing Interest Statement

X.Z. and A.S. have filed a provisional patent application related to this work.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted June 04, 2022.
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Dose-dependent nuclear delivery and transcriptional repression with a cell-penetrant MeCP2
Xizi Zhang, Madeline Zoltek, Deepto Mozumdar, Alanna Schepartz
bioRxiv 2022.06.03.494754; doi: https://doi.org/10.1101/2022.06.03.494754
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Dose-dependent nuclear delivery and transcriptional repression with a cell-penetrant MeCP2
Xizi Zhang, Madeline Zoltek, Deepto Mozumdar, Alanna Schepartz
bioRxiv 2022.06.03.494754; doi: https://doi.org/10.1101/2022.06.03.494754

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