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Fossil-explorer.com: An efficient interactive approach to exploring fossil data

Junqi Wu, Honghe Xu, Zhaohui Pan, View ORCID ProfileZhibin Niu
doi: https://doi.org/10.1101/2022.06.12.495851
Junqi Wu
1Tianjin University
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Honghe Xu
2Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences
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Zhaohui Pan
3Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences
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Zhibin Niu
4Tianjin University, and Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences
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  • ORCID record for Zhibin Niu
  • For correspondence: zniu@tju.edu.cn
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Abstract

Fossils today are increasingly being digitized and documented by multi-modal data obtained from visual data (i.e., photos and tomographic images), as well as text, locations, geological ages, and other chemical and physical measurements. Popular online websites such as PBDB and GBDB offer visual explorations of specimens' localities, but they have limited multi-modal data visualization abilities and face challenges related to visual obscuration and insufficient interaction/exploration. Here, we present fossil-explorer.com, a continuously developing open-source online tool for assisting paleontologists with interactively exploring fossil collections. The tool is designed to address the issues of visual clutter, limited data types, and insufficient interactions. It is intuitive and endorsed by paleontologists. We have also quantitatively evaluated the tool by measuring the interaction scaling performance. The results show that it provides sublinear interaction performance and thus is able to deal efficiently with millions-level data. The current fossil-explorer.com demonstrates the Ordovician to Silurian graptolite fossil multimedia dataset, which is significant in global stratigraphy and shale gas exploration. The extended version also facilitates the use of Deepbone (http://deepbone.org), world's most comprehensive database of vertebrate paleontology database. We developed the code for fossil-explorer.com to be open access and will continue to improve it.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • http://fossil-explorer.com

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted June 16, 2022.
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Fossil-explorer.com: An efficient interactive approach to exploring fossil data
Junqi Wu, Honghe Xu, Zhaohui Pan, Zhibin Niu
bioRxiv 2022.06.12.495851; doi: https://doi.org/10.1101/2022.06.12.495851
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Fossil-explorer.com: An efficient interactive approach to exploring fossil data
Junqi Wu, Honghe Xu, Zhaohui Pan, Zhibin Niu
bioRxiv 2022.06.12.495851; doi: https://doi.org/10.1101/2022.06.12.495851

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