New Results
Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction
Adriana Salcedo, Maxime Tarabichi, Alex Buchanan, Shadrielle M.G. Espiritu, Hongjiu Zhang, Kaiyi Zhu, Tai-Hsien Ou Yang, Ignaty Leshchiner, View ORCID ProfileDimitris Anastassiou, Yuanfang Guan, Gun Ho Jang, Kerstin Haase, Amit G. Deshwar, William Zou, Imaad Umar, Stefan Dentro, Jeff A. Wintersinger, Kami Chiotti, Jonas Demeulemeester, Clemency Jolly, Lesia Sycza, Minjeong Ko, PCAWG-11 Working Group, SMC-Het Participants, David C. Wedge, Quaid D. Morris, Kyle Ellrott, Peter Van Loo, View ORCID ProfilePaul C. Boutros
doi: https://doi.org/10.1101/2022.06.14.495937
Adriana Salcedo
1Department of Human Genetics, University of California Los Angeles, USA
2Jonsson Comprehensive Cancer Center, University of California Los Angeles, USA
3Institute for Precision Health, University of California Los Angeles, USA
4Department of Medical Biophysics, University of Toronto, Canada
5Ontario Institute for Cancer Research, Toronto, Canada
Maxime Tarabichi
6The Francis Crick Institute, London, United Kingdom
7Wellcome Sanger Institute, Hinxton, United Kingdom
8Institute for Interdisciplinary Research, Université Libre de Bruxelles, Brussels, Belgium
Alex Buchanan
9Oregon Health & Sciences University, Portland, USA
Shadrielle M.G. Espiritu
5Ontario Institute for Cancer Research, Toronto, Canada
Hongjiu Zhang
10Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
Kaiyi Zhu
11Department of Systems Biology, Columbia University, New York, USA
12Center for Cancer Systems Therapeutics, Columbia University, New York, USA
13Department of Electrical Engineering, Columbia University, New York, USA
Tai-Hsien Ou Yang
11Department of Systems Biology, Columbia University, New York, USA
12Center for Cancer Systems Therapeutics, Columbia University, New York, USA
13Department of Electrical Engineering, Columbia University, New York, USA
Ignaty Leshchiner
14Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, USA
Dimitris Anastassiou
11Department of Systems Biology, Columbia University, New York, USA
12Center for Cancer Systems Therapeutics, Columbia University, New York, USA
13Department of Electrical Engineering, Columbia University, New York, USA
15Herbert Irving Comprehensive Cancer Center, Columbia University, USA
Yuanfang Guan
10Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA
16Department of Internal Medicine, University of Michigan, Ann Arbor, USA
17Department of Electronic Engineer and Computer Science, University of Michigan, Ann Arbor, USA
Gun Ho Jang
5Ontario Institute for Cancer Research, Toronto, Canada
Kerstin Haase
6The Francis Crick Institute, London, United Kingdom
Amit G. Deshwar
18Department of Computer Science, University of Toronto, Toronto, Canada
William Zou
5Ontario Institute for Cancer Research, Toronto, Canada
Imaad Umar
5Ontario Institute for Cancer Research, Toronto, Canada
Stefan Dentro
6The Francis Crick Institute, London, United Kingdom
7Wellcome Sanger Institute, Hinxton, United Kingdom
Jeff A. Wintersinger
18Department of Computer Science, University of Toronto, Toronto, Canada
Kami Chiotti
9Oregon Health & Sciences University, Portland, USA
Jonas Demeulemeester
6The Francis Crick Institute, London, United Kingdom
19Department of Human Genetics, University of Leuven, Leuven, Belgium
Clemency Jolly
6The Francis Crick Institute, London, United Kingdom
Lesia Sycza
5Ontario Institute for Cancer Research, Toronto, Canada
Minjeong Ko
5Ontario Institute for Cancer Research, Toronto, Canada
David C. Wedge
20Big Data Institute, University of Oxford, Oxford, United Kingdom
21Manchester Cancer Research Center, University of Manchester, Manchester, United Kingdom
Quaid D. Morris
18Department of Computer Science, University of Toronto, Toronto, Canada
22Computational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, New York, USA
23Vector Institute, Toronto, Canada
Kyle Ellrott
9Oregon Health & Sciences University, Portland, USA
Peter Van Loo
6The Francis Crick Institute, London, United Kingdom
24Department of Genetics, The University of Texas MD Anderson Cancer Center, USA
25Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, USA
Paul C. Boutros
1Department of Human Genetics, University of California Los Angeles, USA
2Jonsson Comprehensive Cancer Center, University of California Los Angeles, USA
3Institute for Precision Health, University of California Los Angeles, USA
4Department of Medical Biophysics, University of Toronto, Canada
26Department of Pharmacology and Toxicology, University of Toronto, Canada
27Department of Urology; University of California Los Angeles, USA
28Broad Stem Cell Research Center; University of California Los Angeles, USA
29California NanoSystems Institute; University of California Los Angeles, USA
Posted June 15, 2022.
Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction
Adriana Salcedo, Maxime Tarabichi, Alex Buchanan, Shadrielle M.G. Espiritu, Hongjiu Zhang, Kaiyi Zhu, Tai-Hsien Ou Yang, Ignaty Leshchiner, Dimitris Anastassiou, Yuanfang Guan, Gun Ho Jang, Kerstin Haase, Amit G. Deshwar, William Zou, Imaad Umar, Stefan Dentro, Jeff A. Wintersinger, Kami Chiotti, Jonas Demeulemeester, Clemency Jolly, Lesia Sycza, Minjeong Ko, PCAWG-11 Working Group, SMC-Het Participants, David C. Wedge, Quaid D. Morris, Kyle Ellrott, Peter Van Loo, Paul C. Boutros
bioRxiv 2022.06.14.495937; doi: https://doi.org/10.1101/2022.06.14.495937
Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction
Adriana Salcedo, Maxime Tarabichi, Alex Buchanan, Shadrielle M.G. Espiritu, Hongjiu Zhang, Kaiyi Zhu, Tai-Hsien Ou Yang, Ignaty Leshchiner, Dimitris Anastassiou, Yuanfang Guan, Gun Ho Jang, Kerstin Haase, Amit G. Deshwar, William Zou, Imaad Umar, Stefan Dentro, Jeff A. Wintersinger, Kami Chiotti, Jonas Demeulemeester, Clemency Jolly, Lesia Sycza, Minjeong Ko, PCAWG-11 Working Group, SMC-Het Participants, David C. Wedge, Quaid D. Morris, Kyle Ellrott, Peter Van Loo, Paul C. Boutros
bioRxiv 2022.06.14.495937; doi: https://doi.org/10.1101/2022.06.14.495937
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