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An engineered xCas12i with high activity, high specificity and broad PAM range

Hainan Zhang, Xiangfeng Kong, Mingxing Xue, Zikang Wang, Yinghui Wei, Haoqiang Wang, Jingxing Zhou, Weihong Zhang, Mengqiu Xu, Xiaowen Shen, Jinhui Li, Jing Hu, Na Zhong, Yingsi Zhou, Hui Yang
doi: https://doi.org/10.1101/2022.06.15.496255
Hainan Zhang
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Xiangfeng Kong
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Mingxing Xue
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Zikang Wang
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Yinghui Wei
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Haoqiang Wang
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Jingxing Zhou
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Weihong Zhang
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Mengqiu Xu
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Xiaowen Shen
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Jinhui Li
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Jing Hu
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Na Zhong
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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Yingsi Zhou
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
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  • For correspondence: ys@huiedit.com huiyang@huidagene.com
Hui Yang
1HUIEDIT Therapeutics Inc., Shanghai 200031, China
2HUIGENE Therapeutics Inc., Shanghai 200131, China
3Institute of Neuroscience, State Key Laboratory of Neuroscience, Key Laboratory of Primate Neurobiology, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China
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  • For correspondence: ys@huiedit.com huiyang@huidagene.com
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Abstract

The type-V CRISPR effector Cas12i, with its smaller size, short crRNA guiding, and self-processing features, is a potentially versatile genome editing tool. By screening Cas12i proteins from a metagenomic database, we identified a natural variant with high activity in mammalian cells, named as xCas12i. We further engineered the PAM-interacting, REC, and RuvC domains for enhanced cleavage activity and specificity. This variant, named as high-fidelity Cas12Max, exhibited robust genome editing activity and minimal off-target activity with a broad 5’-TN recognition profile. With the fusion of deaminase TadA8e and further optimization of xCas12i, the base editor dCas12i-Tad8e also showed the high editing efficiency. This study provides highly efficient and specific tools for gene therapy.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 17, 2022.
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An engineered xCas12i with high activity, high specificity and broad PAM range
Hainan Zhang, Xiangfeng Kong, Mingxing Xue, Zikang Wang, Yinghui Wei, Haoqiang Wang, Jingxing Zhou, Weihong Zhang, Mengqiu Xu, Xiaowen Shen, Jinhui Li, Jing Hu, Na Zhong, Yingsi Zhou, Hui Yang
bioRxiv 2022.06.15.496255; doi: https://doi.org/10.1101/2022.06.15.496255
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An engineered xCas12i with high activity, high specificity and broad PAM range
Hainan Zhang, Xiangfeng Kong, Mingxing Xue, Zikang Wang, Yinghui Wei, Haoqiang Wang, Jingxing Zhou, Weihong Zhang, Mengqiu Xu, Xiaowen Shen, Jinhui Li, Jing Hu, Na Zhong, Yingsi Zhou, Hui Yang
bioRxiv 2022.06.15.496255; doi: https://doi.org/10.1101/2022.06.15.496255

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