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An open source plant kinase chemogenomics set

View ORCID ProfileMaria Florencia Ercoli, View ORCID ProfilePriscila Zonzini Ramos, View ORCID ProfileRashmi Jain, Joseph Pilotte, Oliver Xiaoou Dong, Ty Thompson, View ORCID ProfileCarrow I. Wells, Jonathan M. Elkins, Aled M Edwards, View ORCID ProfileRafael M. Couñago, View ORCID ProfileDavid H. Drewry, View ORCID ProfilePamela C. Ronald
doi: https://doi.org/10.1101/2022.06.18.496431
Maria Florencia Ercoli
3Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA
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Priscila Zonzini Ramos
1Centro de Química Medicinal (CQMED), Centro de Biologia Molecular e Engenharia Genética (CBMEG), Universidade Estadual de Campinas (UNICAMP), Campinas, SP, 13083-875, Brazil
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Rashmi Jain
3Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA
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Joseph Pilotte
4Structural Genomics Consortium (SGC), UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill (UNC-CH), Chapel Hill, NC 27599, USA
5Division of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, UNC-CH, Chapel Hill, NC 27599, USA
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Oliver Xiaoou Dong
3Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA
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Ty Thompson
3Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA
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Carrow I. Wells
4Structural Genomics Consortium (SGC), UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill (UNC-CH), Chapel Hill, NC 27599, USA
5Division of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, UNC-CH, Chapel Hill, NC 27599, USA
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Jonathan M. Elkins
1Centro de Química Medicinal (CQMED), Centro de Biologia Molecular e Engenharia Genética (CBMEG), Universidade Estadual de Campinas (UNICAMP), Campinas, SP, 13083-875, Brazil
2Centre for Medicines Discovery, University of Oxford, Old Road Campus Research Building, Roosevelt Drive, Oxford, OX3 7DQ, UK
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Aled M Edwards
6Structural Genomics Consortium, University of Toronto, Toronto, Canada
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Rafael M. Couñago
1Centro de Química Medicinal (CQMED), Centro de Biologia Molecular e Engenharia Genética (CBMEG), Universidade Estadual de Campinas (UNICAMP), Campinas, SP, 13083-875, Brazil
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David H. Drewry
4Structural Genomics Consortium (SGC), UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill (UNC-CH), Chapel Hill, NC 27599, USA
5Division of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, UNC-CH, Chapel Hill, NC 27599, USA
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Pamela C. Ronald
3Department of Plant Pathology and the Genome Center, University of California, Davis, CA, USA
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  • For correspondence: pcronald@ucdavis.edu
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Abstract

129 protein kinases, selected to represent the diversity of the rice (Oryza sativa) kinome, were cloned and tested for expression in E. coli. 40 of these rice kinases were purified and screened using differential scanning fluorimetry (DSF) against 627 diverse kinase inhibitors, with a range of structures and activities targeting diverse human kinases. 37 active compounds were then tested for their ability to modify primary root development in Arabidopsis. Of these, 14 compounds caused a significant reduction of primary root length and two slightly increased root elongation compared with control plants. Two inhibitory compounds bind to the predicted orthologue of Arabidopsis PSKR1, one of two receptors for PSK, a small sulfated peptide that positively controls root development. Inhibition could not be rescued by the exogenous addition of the PSK peptide, suggesting that chemical treatment may inhibit both PSKR1 and its closely related receptor PSKR2. Of the compounds acting as root growth inhibitors in Arabidopsis, six conferred the same effect in rice. Compound RAF265 (CHIR-265), previously shown to bind the human kinase BRAF (B-Raf proto-oncogene, serine/threonine kinase), also binds to nine highly conserved rice kinases tested. The binding of human and rice kinases to the same compound suggests that human kinase inhibitor sets will be useful for dissecting the function of plant kinases.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 19, 2022.
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An open source plant kinase chemogenomics set
Maria Florencia Ercoli, Priscila Zonzini Ramos, Rashmi Jain, Joseph Pilotte, Oliver Xiaoou Dong, Ty Thompson, Carrow I. Wells, Jonathan M. Elkins, Aled M Edwards, Rafael M. Couñago, David H. Drewry, Pamela C. Ronald
bioRxiv 2022.06.18.496431; doi: https://doi.org/10.1101/2022.06.18.496431
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An open source plant kinase chemogenomics set
Maria Florencia Ercoli, Priscila Zonzini Ramos, Rashmi Jain, Joseph Pilotte, Oliver Xiaoou Dong, Ty Thompson, Carrow I. Wells, Jonathan M. Elkins, Aled M Edwards, Rafael M. Couñago, David H. Drewry, Pamela C. Ronald
bioRxiv 2022.06.18.496431; doi: https://doi.org/10.1101/2022.06.18.496431

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