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Beyond Drift Diffusion Models: Fitting a broad class of decision and RL models with HDDM

View ORCID ProfileAlexander Fengler, View ORCID ProfileKrishn Bera, View ORCID ProfileMads L. Pedersen, View ORCID ProfileMichael J. Frank
doi: https://doi.org/10.1101/2022.06.19.496747
Alexander Fengler
1Department of Cognitive, Linguistic and Psychological Sciences, Brown University
2Carney Institute for Brain Science, Brown University
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  • For correspondence: alexander_fengler@brown.edu
Krishn Bera
1Department of Cognitive, Linguistic and Psychological Sciences, Brown University
2Carney Institute for Brain Science, Brown University
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Mads L. Pedersen
1Department of Cognitive, Linguistic and Psychological Sciences, Brown University
3Department of Psychology, University of Oslo, Norway
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Michael J. Frank
1Department of Cognitive, Linguistic and Psychological Sciences, Brown University
2Carney Institute for Brain Science, Brown University
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Abstract

Computational modeling has become an central aspect of research in the cognitive neurosciences. As the field matures, it is increasingly important to move beyond standard models to quantitatively assess models with richer dynamics that may better reflect underlying cognitive and neural processes. For example, sequential sampling models (SSMs) are a general class of models of decision making intended to capture processes jointly giving rise to reaction time distributions and choice data in n-alternative paradigms. A number of model variations are of theoretical interest, but empirical data analysis has historically been tied to a small subset for which likelihood functions are analytically tractable. Advances in methods designed for likelihood-free inference have recently made it computationally feasible to consider a much larger spectrum of sequential sampling models. In addition, recent work has motivated the combination of SSMs with reinforcement learning (RL) models, which had historically been considered in separate literatures. Here we provide a significant addition to the widely used HDDM python toolbox and include a tutorial for how users can easily fit and assess a (user extensible) wide variety of SSMs, and how they can be combined with RL models. The extension comes batteries included, including model visualization tools, posterior predictive checks, and ability to link trial-wise neural signals with model parameters via hierarchical Bayesian regression.

Competing Interest Statement

The authors have declared no competing interest.

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  • https://github.com/AlexanderFengler/hddmnn_tutorial_paper

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted June 21, 2022.
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Beyond Drift Diffusion Models: Fitting a broad class of decision and RL models with HDDM
Alexander Fengler, Krishn Bera, Mads L. Pedersen, Michael J. Frank
bioRxiv 2022.06.19.496747; doi: https://doi.org/10.1101/2022.06.19.496747
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Beyond Drift Diffusion Models: Fitting a broad class of decision and RL models with HDDM
Alexander Fengler, Krishn Bera, Mads L. Pedersen, Michael J. Frank
bioRxiv 2022.06.19.496747; doi: https://doi.org/10.1101/2022.06.19.496747

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