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Fine-tuning of coumaric acid synthesis to increase naringenin production in yeast

Jiwei Mao, Marta Tous Mohedano, Xiaowei Li, Quanli Liu, Jens Nielsen, Verena Siewers, Yun Chen
doi: https://doi.org/10.1101/2022.06.20.496858
Jiwei Mao
aDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE412 96 Gothenburg, Sweden
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Marta Tous Mohedano
aDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE412 96 Gothenburg, Sweden
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Xiaowei Li
aDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE412 96 Gothenburg, Sweden
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Quanli Liu
aDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE412 96 Gothenburg, Sweden
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Jens Nielsen
aDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE412 96 Gothenburg, Sweden
bBioInnovation Institute, DK2200 Copenhagen N, Denmark
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Verena Siewers
aDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE412 96 Gothenburg, Sweden
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Yun Chen
aDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE412 96 Gothenburg, Sweden
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  • For correspondence: yunc@chalmers.se
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Abstract

(2S)-Naringenin is a key precursor for biosynthesis of various high-value flavonoids and possesses a variety of nutritional and pharmaceutical properties on human health. Systematic optimization approaches have been employed to improve (2S)-naringenin production in different microbial hosts. However, very few studies have focused on the spatiotemporal distribution of (2S)-naringenin and related pathway intermediate p-coumaric acid, which is an important factor for efficient production. Here, we show that fine-turning of p-coumaric acid synthesis enables alleviated cell burden and improved (2S)-naringenin production in yeast. First, we systematically optimized the (2S)-naringenin biosynthetic pathway by alleviating the bottleneck downstream of p-coumaric acid and increasing malonyl-CoA supply, which improved (2S)-naringenin production but significant amounts of p-coumaric acid still accumulated outside the cell. We further established a dual dynamic control system through combing a malonyl-CoA biosensor regulator and an RNAi strategy, to autonomously control the synthesis of p-coumaric acid and downregulate a pathway competing for malonyl-CoA. The optimized strains remarkably decreased extracellular accumulation of p-coumaric acid and simultaneously improved (2S)- naringenin production. Finally, production of 933 mg/L of (2S)-naringenin could be achieved by using minimal medium with negligible accumulation of p-coumaric acid. Our work highlights the importance of systematic control of pathway intermediates for efficient microbial production of plant natural products.

Competing Interest Statement

The authors have declared no competing interest.

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Posted June 20, 2022.
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Fine-tuning of coumaric acid synthesis to increase naringenin production in yeast
Jiwei Mao, Marta Tous Mohedano, Xiaowei Li, Quanli Liu, Jens Nielsen, Verena Siewers, Yun Chen
bioRxiv 2022.06.20.496858; doi: https://doi.org/10.1101/2022.06.20.496858
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Fine-tuning of coumaric acid synthesis to increase naringenin production in yeast
Jiwei Mao, Marta Tous Mohedano, Xiaowei Li, Quanli Liu, Jens Nielsen, Verena Siewers, Yun Chen
bioRxiv 2022.06.20.496858; doi: https://doi.org/10.1101/2022.06.20.496858

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