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A CRISPR-engineered Isogenic Model Reveals Altered Neuronal Phenotypes of the 22q11.2 A-B Syndromic Deletion

Neha Paranjape, View ORCID ProfileYu-Hsiu T. Lin, Quetzal Flores-Ramirez, Vishesh Sarin, Amanda Brooke Johnson, Julia Chu, View ORCID ProfileMercedes Paredes, View ORCID ProfileArun P. Wiita
doi: https://doi.org/10.1101/2022.06.22.497212
Neha Paranjape
1Department of Laboratory Medicine, University of California, San Francisco, CA
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Yu-Hsiu T. Lin
1Department of Laboratory Medicine, University of California, San Francisco, CA
2University of Texas Health Science Center at San Antonio, TX
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Quetzal Flores-Ramirez
3Department of Neurology, University of California, San Francisco, CA
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Vishesh Sarin
1Department of Laboratory Medicine, University of California, San Francisco, CA
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Amanda Brooke Johnson
3Department of Neurology, University of California, San Francisco, CA
4San Francisco State University, San Francisco, CA
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Julia Chu
3Department of Neurology, University of California, San Francisco, CA
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Mercedes Paredes
3Department of Neurology, University of California, San Francisco, CA
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  • For correspondence: Arun.wiita@ucsf.edu Mercedes.paredes@ucsf.edu
Arun P. Wiita
1Department of Laboratory Medicine, University of California, San Francisco, CA
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  • For correspondence: Arun.wiita@ucsf.edu Mercedes.paredes@ucsf.edu
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ABSTRACT

The 22q11.2 deletion syndrome (22q11.2DS), associated with congenital and neuropsychiatric anomalies, is the most common copy number variant (CNV)-associated syndrome. Patient-derived, induced pluripotent stem cell (iPS) models have provided important insight into the mechanisms of phenotypic features of this condition. However, patient-derived iPS models may harbor underlying genetic heterogeneity that can confound analysis of pathogenic CNV effects. Furthermore, the ∼1.5 Mb “A-B” deletion at this locus is inherited at higher frequency than the more common ∼3 Mb “A-D” deletion, but remains under-studied due to lack of relevant models. To address these issues, here we leveraged a CRISPR-based strategy in Cas9-expressing iPS cells to engineer novel isogenic models of the 22q11.2 “A-B” deletion. After in vitro differentiation to excitatory neurons, integrated transcriptomic and cell surface proteomics identified deletion-associated alterations in surface adhesion and cell signaling. Furthermore, implantation of iPS-derived neuronal progenitor cells into the cortex of neonatal mice found accelerated neuronal maturation within a relevant microenvironment. Taken together, our results suggest pathogenic mechanisms of the 22q11.2 “A-B” deletion in driving neuronal and neurodevelopmental phenotypes, both in vitro and in vivo. We further propose that the isogenic models generated here will provide a unique resource to study this less-common variant of the 22q11.2 microdeletion syndrome.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 24, 2022.
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A CRISPR-engineered Isogenic Model Reveals Altered Neuronal Phenotypes of the 22q11.2 A-B Syndromic Deletion
Neha Paranjape, Yu-Hsiu T. Lin, Quetzal Flores-Ramirez, Vishesh Sarin, Amanda Brooke Johnson, Julia Chu, Mercedes Paredes, Arun P. Wiita
bioRxiv 2022.06.22.497212; doi: https://doi.org/10.1101/2022.06.22.497212
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A CRISPR-engineered Isogenic Model Reveals Altered Neuronal Phenotypes of the 22q11.2 A-B Syndromic Deletion
Neha Paranjape, Yu-Hsiu T. Lin, Quetzal Flores-Ramirez, Vishesh Sarin, Amanda Brooke Johnson, Julia Chu, Mercedes Paredes, Arun P. Wiita
bioRxiv 2022.06.22.497212; doi: https://doi.org/10.1101/2022.06.22.497212

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