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Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle

View ORCID ProfileGiovanna Capovilla, Rogier Braakman, Gregory Fournier, Thomas Hackl, View ORCID ProfileJulia Schwartzman, Xinda Lu, Alexis Yelton, Krista Longnecker, Melissa Kido Soule, Elaina Thomas, Gretchen Swarr, View ORCID ProfileAlessandro Mongera, Jack Payette, Jacob Waldbauer, Elizabeth B. Kujawinski, Otto X. Cordero, Sallie W. Chisholm
doi: https://doi.org/10.1101/2022.06.23.497379
Giovanna Capovilla
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
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  • ORCID record for Giovanna Capovilla
  • For correspondence: giocapo@mit.edu braakman@mit.edu chisholm@mit.edu
Rogier Braakman
2Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
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  • For correspondence: giocapo@mit.edu braakman@mit.edu chisholm@mit.edu
Gregory Fournier
2Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
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Thomas Hackl
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
3Groningen Institute of Evolutionary Life Sciences, University of Groningen, Groningen, Netherlands
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Julia Schwartzman
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
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  • ORCID record for Julia Schwartzman
Xinda Lu
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
4DermBiont Inc., Boston, MA, United States
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Alexis Yelton
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
5ActZero.ai, Seattle, WA, United States
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Krista Longnecker
6Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
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Melissa Kido Soule
6Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
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Elaina Thomas
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
7School of Oceanography, University of Washington, Seattle, WA, USA
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Gretchen Swarr
6Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
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Alessandro Mongera
8Department of Pathology, Brigham and Women’s Hospital, Boston, MA, USA
9Department of Genetics, Harvard Medical School, Boston, MA, USA
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Jack Payette
2Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
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Jacob Waldbauer
10Department of the Geophysical Sciences, University of Chicago, Chicago, IL, USA
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Elizabeth B. Kujawinski
6Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
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Otto X. Cordero
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
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Sallie W. Chisholm
1Department of Civil & Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
11Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA
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  • For correspondence: giocapo@mit.edu braakman@mit.edu chisholm@mit.edu
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ABSTRACT

Marine picocyanobacteria (Prochlorococcus and Synechococcus), the most abundant photosynthetic cells in the oceans, are generally thought to have a primarily single-celled and free-living lifestyle. However, we find that genes for breaking down chitin - an abundant source of organic carbon that primarily exists as particles - are widespread in this group. We further show that cells with a chitin degradation pathway display chitin degradation activity, attach to chitin particles and show enhanced growth under low light conditions when exposed to chitosan, a partially deacetylated form of chitin. Marine chitin is largely derived from arthropods, whose roots lie in the early Phanerozoic, 520-535 million years ago, close to when marine picocyanobacteria began colonizing the ocean. We postulate that attachment to chitin particles allowed benthic cyanobacteria to emulate their mat-based lifestyle in the water column, initiating their expansion into the open ocean, seeding the rise of modern marine ecosystems. Transitioning to a constitutive planktonic life without chitin associations along a major early branch within the Prochlorococcus tree led to cellular and genomic streamlining. Our work highlights how coevolution across trophic levels creates metabolic opportunities and drives biospheric expansions.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Added contact information of the corresponding authors Giovanna Capovilla (giocapo@mit.edu) Rogier Braakman (braakman@mit.edu) Sallie W. Chisholm (chisholm@mit.edu)

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 27, 2022.
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Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle
Giovanna Capovilla, Rogier Braakman, Gregory Fournier, Thomas Hackl, Julia Schwartzman, Xinda Lu, Alexis Yelton, Krista Longnecker, Melissa Kido Soule, Elaina Thomas, Gretchen Swarr, Alessandro Mongera, Jack Payette, Jacob Waldbauer, Elizabeth B. Kujawinski, Otto X. Cordero, Sallie W. Chisholm
bioRxiv 2022.06.23.497379; doi: https://doi.org/10.1101/2022.06.23.497379
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Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle
Giovanna Capovilla, Rogier Braakman, Gregory Fournier, Thomas Hackl, Julia Schwartzman, Xinda Lu, Alexis Yelton, Krista Longnecker, Melissa Kido Soule, Elaina Thomas, Gretchen Swarr, Alessandro Mongera, Jack Payette, Jacob Waldbauer, Elizabeth B. Kujawinski, Otto X. Cordero, Sallie W. Chisholm
bioRxiv 2022.06.23.497379; doi: https://doi.org/10.1101/2022.06.23.497379

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