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Hexokinase 1b is a novel target for Non–small-cell lung cancer

Yasemin Yozgat, Emre Karakoc, Ozgur Sahin, Seyma Cimen, Wael M. Rabeh, Mehmet Serif Aydin, Adil Mardinoglu, Ihsan Gursel, Asli Cakir, Ozge Sensoy, Ekrem M. Ozdemir, Yusuf Bayrak, Mehmet Z. Gunluoglu, Ozge Saatci, Javaid Jabbar, Juliana C. Ferreira, Melike Dinccelik Aslan, Muzaffer Yildirim, Samman Mansoor, Bilal E. Kerman, Zeynep Aladag, Woonghee Kim, Muhammad Arif, Emre Vatandaslar, Olgu E. Tok, Zeynep Dogru, Aslı G. O. Demir, Tugce Canavar Yildirim, İhsan Yozgat, Serif Senturk, Gurkan Ozturk, Murat Alper Cevher
doi: https://doi.org/10.1101/2022.06.27.497447
Yasemin Yozgat
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
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  • For correspondence: yyozgat@medipol.edu.tr gozturk@medipol.edu.tr murat.cevher@bilkent.edu.tr
Emre Karakoc
2Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, UK
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Ozgur Sahin
3Department of Biochemistry and Molecular Biology, Hollings Cancer Center, Medical University of South Carolina, Charleston, SC, 29425, USA
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Seyma Cimen
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
4Department of Nutrition and Dietetics, School of Health Sciences, Istanbul Medipol University, Istanbul, Turkey
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Wael M. Rabeh
5Science Division, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates
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Mehmet Serif Aydin
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
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Adil Mardinoglu
6Science for Life Laboratory (SciLifeLab), KTH-Royal Institute of Technology, Tomtebodavägen 23, 171 65 Solna, Stockholm, Sweden
7Centre for Host–Microbiome Interactions, Faculty of Dentistry, Oral & Craniofacial Sciences, King’s College London, SE1 9RT London, UK
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Ihsan Gursel
8Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, 06800 Ankara, Turkey
9Izmir Biomedicine and Genome Center, Izmir, 35340 Balcova, Turkey
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Asli Cakir
10Istanbul Medipol University, Faculty of Medicine, Department of Pathology, Istanbul, Turkey
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Ozge Sensoy
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
11Department of Computer Engineering, School of Engineering and Natural Sciences, Istanbul Medipol University, Istanbul, Turkey
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Ekrem M. Ozdemir
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
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Yusuf Bayrak
12Department of Thoracic and Cardiovascular Surgery, Heart and Vascular Institute, Cleveland Clinic Abu Dhabi, Abu Dhabi, United Arab Emirates
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Mehmet Z. Gunluoglu
13Istanbul Medipol University, Faculty of Medicine, Department of Thoracic Surgery, Istanbul, Turkey
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Ozge Saatci
3Department of Biochemistry and Molecular Biology, Hollings Cancer Center, Medical University of South Carolina, Charleston, SC, 29425, USA
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Javaid Jabbar
14Department of Biochemistry and pharmacology, Melbourne University, Parkville, Melbourne, 3010, Australia
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Juliana C. Ferreira
5Science Division, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates
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Melike Dinccelik Aslan
8Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, 06800 Ankara, Turkey
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Muzaffer Yildirim
8Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, 06800 Ankara, Turkey
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Samman Mansoor
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
11Department of Computer Engineering, School of Engineering and Natural Sciences, Istanbul Medipol University, Istanbul, Turkey
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Bilal E. Kerman
15Departments of Medicine and Neurology, University of Southern California, Los Angeles, California, 90033
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Zeynep Aladag
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
16Department of Medical Biology and Genetics, Institute of Health Sciences, Istanbul Medipol University, Istanbul
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Woonghee Kim
6Science for Life Laboratory (SciLifeLab), KTH-Royal Institute of Technology, Tomtebodavägen 23, 171 65 Solna, Stockholm, Sweden
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Muhammad Arif
6Science for Life Laboratory (SciLifeLab), KTH-Royal Institute of Technology, Tomtebodavägen 23, 171 65 Solna, Stockholm, Sweden
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Emre Vatandaslar
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
17Department of Histology and Embriology, Istanbul Medipol University, Istanbul, Turkey
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Olgu E. Tok
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
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Zeynep Dogru
18Department of Biochemistry, Faculty of Medicine, Istanbul Medipol University, Istanbul, Turkey
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Aslı G. O. Demir
19Department of Microbiology, Istanbul Medipol University, Istanbul, Turkey
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Tugce Canavar Yildirim
8Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, 06800 Ankara, Turkey
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İhsan Yozgat
20Department of Medical Biotechnology, Institute of Health Sciences, Acıbadem Mehmet Ali Aydınlar University, Istanbul, Turkey
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Serif Senturk
9Izmir Biomedicine and Genome Center, Izmir, 35340 Balcova, Turkey
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Gurkan Ozturk
1Institute for Health Sciences and Technologies (SABITA), Istanbul Medipol University, Istanbul, Turkey, 34956
22Department of Physiology, School of International Medicine, Istanbul Medipol University, Istanbul, Turkey
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  • For correspondence: yyozgat@medipol.edu.tr gozturk@medipol.edu.tr murat.cevher@bilkent.edu.tr
Murat Alper Cevher
8Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, 06800 Ankara, Turkey
23Laboratory of Biochemistry and Molecular Biology, Rockefeller University, New York, New York, USA
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  • For correspondence: yyozgat@medipol.edu.tr gozturk@medipol.edu.tr murat.cevher@bilkent.edu.tr
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SUMMARY

Deregulation of glycolysis is common in non-small cell lung cancer (NSCLC). Hexokinase (HK) enzymes catalyze the phosphoryl-group-transfer in glucose metabolism. There are a very few studies that have begun to reveal the connections between glucose metabolism and splicing programs. Unlike HK2 gene, which is expressed as a single transcript, there are several transcripts of the HK1 gene due to alternative splicing. However, the functional differential roles of HK1 isoforms in glucose metabolism and tumor progression are still elusive. Here, we show that primary NSCLC patient tumor cells metabolically differ from the normal lung epithelium where they display predominant expression of one of the HK1 transcripts, hexokinase1b (HK1b). We utilized CRISPR-Cas9 system to selectively target specific HK1b isoform in NSCLC and show that silencing HK1b in NSCLC cells inhibits tumorigenesis through diminishing glycolysis and proliferation. Our findings constitute the first demonstration of the first biochemical distinction between the HK1 splice variants. Finally, HK1b deletion sensitizes NSCLC cells to standard-of-care, cisplatin treatment, and the combination therapy synergistically increases both apoptotic cell death by cisplatin and autophagic cell death by increased formation of LC3-II associated autophagic vesicles and myelinoid bodies. Notably, loss of HK1b leads to cellular DNA damage, further combination with cisplatin therapy showed significantly increased levels of DNA damage. Importantly, we showed that glycolysis and cisplatin resistance can be restored by adding-back HK1b in HK1b knock-out cells. Our findings reveal that targeting HK1b isoform alone or in combination with cisplatin may represent a novel strategy for NSCLC patients.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • The authors declare no potential conflicts of interest

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Hexokinase 1b is a novel target for Non–small-cell lung cancer
Yasemin Yozgat, Emre Karakoc, Ozgur Sahin, Seyma Cimen, Wael M. Rabeh, Mehmet Serif Aydin, Adil Mardinoglu, Ihsan Gursel, Asli Cakir, Ozge Sensoy, Ekrem M. Ozdemir, Yusuf Bayrak, Mehmet Z. Gunluoglu, Ozge Saatci, Javaid Jabbar, Juliana C. Ferreira, Melike Dinccelik Aslan, Muzaffer Yildirim, Samman Mansoor, Bilal E. Kerman, Zeynep Aladag, Woonghee Kim, Muhammad Arif, Emre Vatandaslar, Olgu E. Tok, Zeynep Dogru, Aslı G. O. Demir, Tugce Canavar Yildirim, İhsan Yozgat, Serif Senturk, Gurkan Ozturk, Murat Alper Cevher
bioRxiv 2022.06.27.497447; doi: https://doi.org/10.1101/2022.06.27.497447
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Hexokinase 1b is a novel target for Non–small-cell lung cancer
Yasemin Yozgat, Emre Karakoc, Ozgur Sahin, Seyma Cimen, Wael M. Rabeh, Mehmet Serif Aydin, Adil Mardinoglu, Ihsan Gursel, Asli Cakir, Ozge Sensoy, Ekrem M. Ozdemir, Yusuf Bayrak, Mehmet Z. Gunluoglu, Ozge Saatci, Javaid Jabbar, Juliana C. Ferreira, Melike Dinccelik Aslan, Muzaffer Yildirim, Samman Mansoor, Bilal E. Kerman, Zeynep Aladag, Woonghee Kim, Muhammad Arif, Emre Vatandaslar, Olgu E. Tok, Zeynep Dogru, Aslı G. O. Demir, Tugce Canavar Yildirim, İhsan Yozgat, Serif Senturk, Gurkan Ozturk, Murat Alper Cevher
bioRxiv 2022.06.27.497447; doi: https://doi.org/10.1101/2022.06.27.497447

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