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Characterization of a KDM5 Small Molecule Inhibitor with Antiviral Activity against Hepatitis B Virus

Sarah A. Gilmore, Danny Tam, Tara L. Cheung, Chelsea Snyder, Julie Farand, Ryan Dick, Mike Matles, Joy Y. Feng, Ricardo Ramirez, Li Li, Helen Yu, Yili Xu, Dwight Barnes, Gregg Czerwieniec, Katherine M. Brendza, Todd C. Appleby, Gabriel Birkus, Madeleine Willkom, Tetsuya Kobayashi, Eric Paoli, Marc Labelle, Thomas Boesen, Chin H. Tay, William E. Delaney IV, Gregory T. Notte, View ORCID ProfileUli Schmitz, Becket Feierbach
doi: https://doi.org/10.1101/2022.06.27.497732
Sarah A. Gilmore
aGilead Sciences, Inc., Foster City, California, USA
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Danny Tam
aGilead Sciences, Inc., Foster City, California, USA
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Tara L. Cheung
aGilead Sciences, Inc., Foster City, California, USA
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Chelsea Snyder
aGilead Sciences, Inc., Foster City, California, USA
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Julie Farand
aGilead Sciences, Inc., Foster City, California, USA
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Ryan Dick
aGilead Sciences, Inc., Foster City, California, USA
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Mike Matles
aGilead Sciences, Inc., Foster City, California, USA
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Joy Y. Feng
aGilead Sciences, Inc., Foster City, California, USA
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Ricardo Ramirez
aGilead Sciences, Inc., Foster City, California, USA
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Li Li
aGilead Sciences, Inc., Foster City, California, USA
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Helen Yu
aGilead Sciences, Inc., Foster City, California, USA
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Yili Xu
aGilead Sciences, Inc., Foster City, California, USA
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Dwight Barnes
aGilead Sciences, Inc., Foster City, California, USA
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Gregg Czerwieniec
aGilead Sciences, Inc., Foster City, California, USA
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Katherine M. Brendza
aGilead Sciences, Inc., Foster City, California, USA
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Todd C. Appleby
aGilead Sciences, Inc., Foster City, California, USA
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Gabriel Birkus
aGilead Sciences, Inc., Foster City, California, USA
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Madeleine Willkom
aGilead Sciences, Inc., Foster City, California, USA
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Tetsuya Kobayashi
aGilead Sciences, Inc., Foster City, California, USA
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Eric Paoli
aGilead Sciences, Inc., Foster City, California, USA
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Marc Labelle
fEpiTherapeutics ApS, Copenhagen, Denmark
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Thomas Boesen
fEpiTherapeutics ApS, Copenhagen, Denmark
gNovo Nordisk A/S, Bagsvaerd, Denmark
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Chin H. Tay
aGilead Sciences, Inc., Foster City, California, USA
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William E. Delaney IV
aGilead Sciences, Inc., Foster City, California, USA
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Gregory T. Notte
aGilead Sciences, Inc., Foster City, California, USA
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Uli Schmitz
aGilead Sciences, Inc., Foster City, California, USA
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  • ORCID record for Uli Schmitz
  • For correspondence: uli.schmitz@gilead.com
Becket Feierbach
aGilead Sciences, Inc., Foster City, California, USA
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Abstract

Chronic hepatitis B (CHB) is a global health care challenge and a major cause of liver disease. To find new therapeutic avenues with a potential to functionally cure chronic Hepatitis B virus (HBV) infection, we performed a focused screen of epigenetic modifiers to identify replication inhibitors. From this work we identified isonicotinic acid inhibitors of the histone lysine demethylase 5 (KDM5) with potent anti-HBV activity. To enhance the cellular permeability and liver accumulation of the most potent KDM5 inhibitor identified (GS-080) an ester prodrug was developed (GS-5801) that resulted in improved bioavailability and liver exposure as well as an increased H3K4me3:H3 ratio on chromatin. GS-5801 treatment of HBV-infected primary human hepatocytes inhibited HBV replication and antigen levels. Evaluation of GS-5801 antiviral activity in a humanized mouse model of HBV infection, however, did not result in antiviral efficacy, despite achieving pharmacodynamic levels of H3K4me3:H3 predicted to be efficacious from the in vitro model. Here we discuss potential reasons for the disconnect between in vitro and in vivo efficacy, which highlight the translational difficulties of epigenetic targets for viral diseases.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵† Deceased. M.L. passed away before the submission of the final version of this manuscript. U.S. accepts responsibility for the integrity and validity of the data collected and analyzed.

  • Author list has been corrected

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Characterization of a KDM5 Small Molecule Inhibitor with Antiviral Activity against Hepatitis B Virus
Sarah A. Gilmore, Danny Tam, Tara L. Cheung, Chelsea Snyder, Julie Farand, Ryan Dick, Mike Matles, Joy Y. Feng, Ricardo Ramirez, Li Li, Helen Yu, Yili Xu, Dwight Barnes, Gregg Czerwieniec, Katherine M. Brendza, Todd C. Appleby, Gabriel Birkus, Madeleine Willkom, Tetsuya Kobayashi, Eric Paoli, Marc Labelle, Thomas Boesen, Chin H. Tay, William E. Delaney IV, Gregory T. Notte, Uli Schmitz, Becket Feierbach
bioRxiv 2022.06.27.497732; doi: https://doi.org/10.1101/2022.06.27.497732
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Characterization of a KDM5 Small Molecule Inhibitor with Antiviral Activity against Hepatitis B Virus
Sarah A. Gilmore, Danny Tam, Tara L. Cheung, Chelsea Snyder, Julie Farand, Ryan Dick, Mike Matles, Joy Y. Feng, Ricardo Ramirez, Li Li, Helen Yu, Yili Xu, Dwight Barnes, Gregg Czerwieniec, Katherine M. Brendza, Todd C. Appleby, Gabriel Birkus, Madeleine Willkom, Tetsuya Kobayashi, Eric Paoli, Marc Labelle, Thomas Boesen, Chin H. Tay, William E. Delaney IV, Gregory T. Notte, Uli Schmitz, Becket Feierbach
bioRxiv 2022.06.27.497732; doi: https://doi.org/10.1101/2022.06.27.497732

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