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Multifunctional fluorophores for live-cell imaging and affinity capture of proteins

View ORCID ProfilePratik Kumar, View ORCID ProfileJason D. Vevea, View ORCID ProfileEdwin R. Chapman, View ORCID ProfileLuke D. Lavis
doi: https://doi.org/10.1101/2022.07.02.498544
Pratik Kumar
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
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Jason D. Vevea
2Department of Neuroscience, University of Wisconsin–Madison, Madison, WI, USA
3Howard Hughes Medical Institute, University of Wisconsin–Madison, Madison, WI, USA
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Edwin R. Chapman
2Department of Neuroscience, University of Wisconsin–Madison, Madison, WI, USA
3Howard Hughes Medical Institute, University of Wisconsin–Madison, Madison, WI, USA
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Luke D. Lavis
1Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
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  • For correspondence: lavisl@janelia.hhmi.org
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Abstract

The development of enzyme-based self-labeling tags allow the labeling of proteins in living cells with synthetic small-molecules. Use of a fluorophore-containing ligand enables the visualization of protein location inside cells using fluorescence microscopy. Alternatively, deployment of a biotin-containing ligand allows purification of tagged protein using affinity resins. Despite these various applications of self-labeling tags, most ligands serve a single purpose. Here, we describe self-labeling tag ligands that allow both visualization and subsequent capture of a protein. A key design principle is exploiting the chemical properties and size of a rhodamine fluorophore to optimize cell-permeability of the ligand and the capture efficiency of the biotin conjugate. This work generates useful “multifunctional” fluorophores with generalizable design principles that will allow the construction of new tools for biology.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted July 03, 2022.
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Multifunctional fluorophores for live-cell imaging and affinity capture of proteins
Pratik Kumar, Jason D. Vevea, Edwin R. Chapman, Luke D. Lavis
bioRxiv 2022.07.02.498544; doi: https://doi.org/10.1101/2022.07.02.498544
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Multifunctional fluorophores for live-cell imaging and affinity capture of proteins
Pratik Kumar, Jason D. Vevea, Edwin R. Chapman, Luke D. Lavis
bioRxiv 2022.07.02.498544; doi: https://doi.org/10.1101/2022.07.02.498544

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