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Status of Genome Function Annotation in Model Organisms and Crops

View ORCID ProfileBo Xue, View ORCID ProfileSeung Y Rhee
doi: https://doi.org/10.1101/2022.07.03.498619
Bo Xue
Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
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Seung Y Rhee
Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
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  • ORCID record for Seung Y Rhee
  • For correspondence: srhee@carnegiescience.edu
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Abstract

Since the entry into genome-enabled biology 20 years ago, much progress has been made in determining, describing, and disseminating functions of genes and their products. Yet, this information is still difficult to access by many, especially across genomes. To provide easy access to the status of genome function annotation for model organisms and bioenergy and food crop species, we created a web application (https://genomeannotation.rheelab.org) to visualize and download genome annotation data for 27 species. The summary graphics and data tables will be updated semi-annually and snapshots archived to provide a historical record of the progress of genome function annotation efforts.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Emails: srhee{at}carnegiescience.edu (SYR); bxue{at}carnegiescience.edu (BX)

  • https://genomeannotation.rheelab.org

  • https://data.jgi.doe.gov/refine-download/phytozome

  • http://current.geneontology.org/products/pages/downloads.html

  • https://github.com/bxuecarnegie/AnnotationStats

  • https://www.uniprot.org/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 03, 2022.
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Status of Genome Function Annotation in Model Organisms and Crops
Bo Xue, Seung Y Rhee
bioRxiv 2022.07.03.498619; doi: https://doi.org/10.1101/2022.07.03.498619
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Status of Genome Function Annotation in Model Organisms and Crops
Bo Xue, Seung Y Rhee
bioRxiv 2022.07.03.498619; doi: https://doi.org/10.1101/2022.07.03.498619

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