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FOXA2 controls the anti-oxidant response in FH-deficient cells

View ORCID ProfileConnor Rogerson, View ORCID ProfileMarco Sciacovelli, Lucas A Maddalena, View ORCID ProfileLorea Valcarcel-Jimenez, View ORCID ProfileChristina Schmidt, Ming Yang, Elena Ivanova, Joshua Kent, Ariane Mora, Danya Cheeseman, View ORCID ProfileJason S Carroll, View ORCID ProfileGavin Kelsey, View ORCID ProfileChristian Frezza
doi: https://doi.org/10.1101/2022.07.04.498412
Connor Rogerson
1MRC Cancer Unit, University of Cambridge, Hutchison MRC Research Centre, Cambridge Biomedical Campus, Cambridge, United Kingdom
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Marco Sciacovelli
1MRC Cancer Unit, University of Cambridge, Hutchison MRC Research Centre, Cambridge Biomedical Campus, Cambridge, United Kingdom
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  • ORCID record for Marco Sciacovelli
Lucas A Maddalena
1MRC Cancer Unit, University of Cambridge, Hutchison MRC Research Centre, Cambridge Biomedical Campus, Cambridge, United Kingdom
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Lorea Valcarcel-Jimenez
1MRC Cancer Unit, University of Cambridge, Hutchison MRC Research Centre, Cambridge Biomedical Campus, Cambridge, United Kingdom
2CECAD Research Center, Faculty of Medicine, University Hospital Cologne, Cologne, Germany
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Christina Schmidt
1MRC Cancer Unit, University of Cambridge, Hutchison MRC Research Centre, Cambridge Biomedical Campus, Cambridge, United Kingdom
2CECAD Research Center, Faculty of Medicine, University Hospital Cologne, Cologne, Germany
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Ming Yang
1MRC Cancer Unit, University of Cambridge, Hutchison MRC Research Centre, Cambridge Biomedical Campus, Cambridge, United Kingdom
2CECAD Research Center, Faculty of Medicine, University Hospital Cologne, Cologne, Germany
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Elena Ivanova
3Epigenetics Programme, Babraham Institute, Cambridge, UK
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Joshua Kent
4CRUK Cambridge Institute, University of Cambridge, Cambridge, UK
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Ariane Mora
5School of Chemistry and Molecular Biosciences, University of Queensland, Molecular Biosciences Building 76, St Lucia QLD 4072, Australia
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Danya Cheeseman
4CRUK Cambridge Institute, University of Cambridge, Cambridge, UK
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Jason S Carroll
4CRUK Cambridge Institute, University of Cambridge, Cambridge, UK
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Gavin Kelsey
3Epigenetics Programme, Babraham Institute, Cambridge, UK
6Centre for Trophoblast Research, University of Cambridge, Cambridge, UK
7Wellcome-MRC Institute of Metabolic Science - Metabolic Research Laboratories, Cambridge, UK
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Christian Frezza
1MRC Cancer Unit, University of Cambridge, Hutchison MRC Research Centre, Cambridge Biomedical Campus, Cambridge, United Kingdom
2CECAD Research Center, Faculty of Medicine, University Hospital Cologne, Cologne, Germany
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  • For correspondence: christian.frezza@uni-koeln.de
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Abstract

Hereditary Leiomyomatosis and renal cell cancer (HLRCC) is a cancer syndrome caused by inactivating germline mutations in fumarate hydratase (FH) and subsequent accumulation of fumarate. Fumarate accumulation leads to the activation of an anti-oxidant response via nuclear translocation of the transcription factor NRF2. The activation of the anti-oxidant response is key for cellular survival in FH-deficient cells, yet the extent to which chromatin remodelling shapes the anti-oxidant response is currently unknown. Here, we explored the global effects of FH loss on the chromatin landscape to identify transcription factor networks involved in the highly remodelled chromatin landscape of FH-deficient cells. We identify FOXA2 as a key transcription factor which directly regulates anti-oxidant response genes and subsequent metabolic rewiring. Moreover, we also find that FOXA2 regulates anti-oxidant genes independent of the canonical anti-oxidant regulator NRF2. The identification of FOXA2 as an anti-oxidant regulator provides new insights into the molecular mechanisms behind cell responses to fumarate accumulation, and potentially provides new avenues for therapeutic intervention for HLRCC.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Title updated Author list updated Manuscript clarified that only NRF2 is used throughout Majority of figures clarified Section on FOXA2 expression in human tissue samples expanded and clarified Figure 2, 3, and 5 updated and clarified Discussion on FOXA2 expression and FH expanded

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted October 14, 2022.
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FOXA2 controls the anti-oxidant response in FH-deficient cells
Connor Rogerson, Marco Sciacovelli, Lucas A Maddalena, Lorea Valcarcel-Jimenez, Christina Schmidt, Ming Yang, Elena Ivanova, Joshua Kent, Ariane Mora, Danya Cheeseman, Jason S Carroll, Gavin Kelsey, Christian Frezza
bioRxiv 2022.07.04.498412; doi: https://doi.org/10.1101/2022.07.04.498412
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FOXA2 controls the anti-oxidant response in FH-deficient cells
Connor Rogerson, Marco Sciacovelli, Lucas A Maddalena, Lorea Valcarcel-Jimenez, Christina Schmidt, Ming Yang, Elena Ivanova, Joshua Kent, Ariane Mora, Danya Cheeseman, Jason S Carroll, Gavin Kelsey, Christian Frezza
bioRxiv 2022.07.04.498412; doi: https://doi.org/10.1101/2022.07.04.498412

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