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The long noncoding RNA Charme supervises cardiomyocyte maturation by controlling cell differentiation programs in the developing heart

View ORCID ProfileValeria Taliani, View ORCID ProfileGiulia Buonaiuto, Fabio Desideri, Adriano Setti, Tiziana Santini, Silvia Galfrè, Leonardo Schirone, Davide Mariani, Giacomo Frati, Valentina Valenti, Sebastiano Sciarretta, Emerald Perlas, Carmine Nicoletti, Antonio Musarò, View ORCID ProfileMonica Ballarino
doi: https://doi.org/10.1101/2022.07.05.498800
Valeria Taliani
1Department of Biology and Biotechnologies “Charles Darwin”, Sapienza University of Rome, Rome, Italy
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  • ORCID record for Valeria Taliani
Giulia Buonaiuto
1Department of Biology and Biotechnologies “Charles Darwin”, Sapienza University of Rome, Rome, Italy
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Fabio Desideri
2Center for Life Nano- & Neuro-Science of Istituto Italiano di Tecnologia (IIT), 00161, Rome, Italy
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Adriano Setti
1Department of Biology and Biotechnologies “Charles Darwin”, Sapienza University of Rome, Rome, Italy
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Tiziana Santini
1Department of Biology and Biotechnologies “Charles Darwin”, Sapienza University of Rome, Rome, Italy
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Silvia Galfrè
2Center for Life Nano- & Neuro-Science of Istituto Italiano di Tecnologia (IIT), 00161, Rome, Italy
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Leonardo Schirone
3Department of Medical Surgical Sciences and Biotechnologies, Sapienza University of Rome, Latina, Italy
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Davide Mariani
4Center for Human Technologies, Istituto Italiano di Tecnologia (IIT), Genova, Italy
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Giacomo Frati
3Department of Medical Surgical Sciences and Biotechnologies, Sapienza University of Rome, Latina, Italy
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Valentina Valenti
3Department of Medical Surgical Sciences and Biotechnologies, Sapienza University of Rome, Latina, Italy
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Sebastiano Sciarretta
3Department of Medical Surgical Sciences and Biotechnologies, Sapienza University of Rome, Latina, Italy
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Emerald Perlas
5EMBL-Rome, Epigenetics and Neurobiology Unit, Monterotondo, Italy
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Carmine Nicoletti
6DAHFMO-Unit of Histology and Medical Embryology, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci Bolognetti, Sapienza University of Rome, Rome, Italy
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Antonio Musarò
6DAHFMO-Unit of Histology and Medical Embryology, Laboratory affiliated to Istituto Pasteur Italia-Fondazione Cenci Bolognetti, Sapienza University of Rome, Rome, Italy
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Monica Ballarino
1Department of Biology and Biotechnologies “Charles Darwin”, Sapienza University of Rome, Rome, Italy
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  • For correspondence: [email protected]
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ABSTRACT

Long noncoding RNAs (lncRNAs) are emerging as critical regulators of heart physiology and disease, although the studies unveiling their modes-of-action are still limited to few examples. We recently identified pCharme, a chromatin-associated lncRNA whose functional knockout in mice results in defective myogenesis and morphological remodelling of the cardiac muscle. Here, we combined Cap-Analysis of Gene Expression (CAGE), single-cell (sc)RNA sequencing and whole-mount in situ hybridization analyses to study pCharme cardiac expression. Since the early steps of cardiomyogenesis, we found the lncRNA being specifically restricted to cardiomyocytes, where it assists the formation of specific nuclear condensates containing MATR3, as well as important RNAs for cardiac development. In line with the functional significance of these activities, pCharme ablation in mice results in a delayed maturation of cardiomyocytes, which ultimately leads to morphological alterations of the myocardium and ventricular hypo-trabeculation. Since congenital anomalies in myocardium are clinically relevant in humans and predispose patients to major complications, the identification of novel genes controlling cardiac morphology becomes crucial. Our study offers unique insights into a novel lncRNA-mediated regulatory mechanism promoting cardiomyocyte maturation and bears relevance to Charme locus for future theranostic applications.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • More in dept characterization of the mouse model cardiac phenotype and molecular mechanism.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted February 09, 2023.
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The long noncoding RNA Charme supervises cardiomyocyte maturation by controlling cell differentiation programs in the developing heart
Valeria Taliani, Giulia Buonaiuto, Fabio Desideri, Adriano Setti, Tiziana Santini, Silvia Galfrè, Leonardo Schirone, Davide Mariani, Giacomo Frati, Valentina Valenti, Sebastiano Sciarretta, Emerald Perlas, Carmine Nicoletti, Antonio Musarò, Monica Ballarino
bioRxiv 2022.07.05.498800; doi: https://doi.org/10.1101/2022.07.05.498800
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The long noncoding RNA Charme supervises cardiomyocyte maturation by controlling cell differentiation programs in the developing heart
Valeria Taliani, Giulia Buonaiuto, Fabio Desideri, Adriano Setti, Tiziana Santini, Silvia Galfrè, Leonardo Schirone, Davide Mariani, Giacomo Frati, Valentina Valenti, Sebastiano Sciarretta, Emerald Perlas, Carmine Nicoletti, Antonio Musarò, Monica Ballarino
bioRxiv 2022.07.05.498800; doi: https://doi.org/10.1101/2022.07.05.498800

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