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Neural coding of temperature with a DNA-based spiking chemical neuron

N. Lobato-Dauzier, A. Baccouche, G. Gines, T. Lévi, Y. Rondelez, T. Fujii, S. H. Kim, N. Aubert-Kato, A.J. Genot
doi: https://doi.org/10.1101/2022.07.06.498929
N. Lobato-Dauzier
1LIMMS, IRL 2820 CNRS-Institute of Industrial Science, The University of Tokyo; Meguro-ku, Tokyo, 153-8505, Japan
2Center for Interdisciplinary AI and Data Science, Ochanomizu University; Bunkyo-ku, Tokyo, 112-8610, Japan
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A. Baccouche
1LIMMS, IRL 2820 CNRS-Institute of Industrial Science, The University of Tokyo; Meguro-ku, Tokyo, 153-8505, Japan
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G. Gines
3Laboratoire Gulliver, UMR 7083 CNRS, ESPCI Paris, PSL Research University; Paris, 75005, France
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T. Lévi
4Laboratoire IMS, UMR 5218 CNRS, University of Bordeaux; Talence, 33400, France
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Y. Rondelez
3Laboratoire Gulliver, UMR 7083 CNRS, ESPCI Paris, PSL Research University; Paris, 75005, France
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T. Fujii
1LIMMS, IRL 2820 CNRS-Institute of Industrial Science, The University of Tokyo; Meguro-ku, Tokyo, 153-8505, Japan
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S. H. Kim
1LIMMS, IRL 2820 CNRS-Institute of Industrial Science, The University of Tokyo; Meguro-ku, Tokyo, 153-8505, Japan
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N. Aubert-Kato
2Center for Interdisciplinary AI and Data Science, Ochanomizu University; Bunkyo-ku, Tokyo, 112-8610, Japan
5Department of Information Sciences, Ochanomizu University; Bunkyo-ku, Tokyo, 112-8610, Japan
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  • For correspondence: naubertkato@is.ocha.ac.jp genot@iis.u-tokyo.ac.jp
A.J. Genot
1LIMMS, IRL 2820 CNRS-Institute of Industrial Science, The University of Tokyo; Meguro-ku, Tokyo, 153-8505, Japan
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  • For correspondence: naubertkato@is.ocha.ac.jp genot@iis.u-tokyo.ac.jp
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Abstract

Complex organisms perceive their surroundings with sensory neurons which encode physical stimuli into spikes of electrical activities. The past decade has seen reports of DNA-based chemical neurons that mimic artificial neural networks with chemical reactions. Yet, they lack the physical sensing and temporal coding of sensory biological neurons. Here we report a thermosensory chemical neuron based on DNA and enzymes that spikes with chemical activity when exposed to cold. Surprisingly, this chemical neuron shares deep mathematical similarities with a toy model of a cold nociceptive neuron: they follow a similar bifurcation route between rest and oscillations and avoid artefacts associated with canonical bifurcations (such as irreversibility, damping or untimely spiking). We experimentally demonstrate this robustness by encoding - digitally and analogically - thermal messages into chemical waveforms. This chemical neuron could pave the way for implementing in DNA the third generation of neural network models (spiking networks), and opens the door for associative learning.

One-Sentence Summary A DNA-based chemical network mathematically mimics the sensing of cold by a biological neuron.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Figure 2 and corresponding text revised Supplemental files updated Addition of movies S1-S3 and Image S1

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted February 10, 2023.
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Neural coding of temperature with a DNA-based spiking chemical neuron
N. Lobato-Dauzier, A. Baccouche, G. Gines, T. Lévi, Y. Rondelez, T. Fujii, S. H. Kim, N. Aubert-Kato, A.J. Genot
bioRxiv 2022.07.06.498929; doi: https://doi.org/10.1101/2022.07.06.498929
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Neural coding of temperature with a DNA-based spiking chemical neuron
N. Lobato-Dauzier, A. Baccouche, G. Gines, T. Lévi, Y. Rondelez, T. Fujii, S. H. Kim, N. Aubert-Kato, A.J. Genot
bioRxiv 2022.07.06.498929; doi: https://doi.org/10.1101/2022.07.06.498929

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