Katdetectr: utilising unsupervised changepoint analysis for robust kataegis detection

Daan M. Hazelaar; Job van Riet; Youri Hoogstrate; Martijn P. Lolkema; Harmen J. G. van de Werken

doi:10.1101/2022.07.11.499364

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Katdetectr: utilising unsupervised changepoint analysis for robust kataegis detection

View ORCID ProfileDaan M. Hazelaar, View ORCID ProfileJob van Riet, View ORCID ProfileYouri Hoogstrate, View ORCID ProfileMartijn P. Lolkema, View ORCID ProfileHarmen J. G. van de Werken

doi: https://doi.org/10.1101/2022.07.11.499364

Daan M. Hazelaar

1Cancer Computational Biology Centre, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

2Department of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

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ORCID record for Daan M. Hazelaar

Job van Riet

1Cancer Computational Biology Centre, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

2Department of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

3Department of Urology, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

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Youri Hoogstrate

1Cancer Computational Biology Centre, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

4Department of Neurology, Erasmus MC Cancer Institute, Erasmus University Medical Center, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

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Martijn P. Lolkema

2Department of Medical Oncology, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

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Harmen J. G. van de Werken

1Cancer Computational Biology Centre, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

3Department of Urology, Erasmus MC Cancer Institute, Erasmus University Medical Centre, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

5Department of Immunology, Erasmus MC Cancer Institute, Erasmus University Medical Center, Dr. Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands

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For correspondence: h.vandewerken@erasmusmc.nl

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https://www.bioconductor.org/packages/devel/bioc/html/katdetectr.html
https://github.com/ErasmusMC-CCBC/evaluation_katdetectr
https://zenodo.org/record/6623289#.YqBxHi8Rr0o

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Posted July 11, 2022.

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Katdetectr: utilising unsupervised changepoint analysis for robust kataegis detection

Daan M. Hazelaar, Job van Riet, Youri Hoogstrate, Martijn P. Lolkema, Harmen J. G. van de Werken

bioRxiv 2022.07.11.499364; doi: https://doi.org/10.1101/2022.07.11.499364

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Katdetectr: utilising unsupervised changepoint analysis for robust kataegis detection

Daan M. Hazelaar, Job van Riet, Youri Hoogstrate, Martijn P. Lolkema, Harmen J. G. van de Werken

bioRxiv 2022.07.11.499364; doi: https://doi.org/10.1101/2022.07.11.499364

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