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Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids

View ORCID ProfileSpencer T. Seiler, View ORCID ProfileGary L. Mantalas, View ORCID ProfileJohn Selberg, Sergio Cordero, Sebastian Torres-Montoya, View ORCID ProfilePierre V. Baudin, View ORCID ProfileVictoria T. Ly, Finn Amend, Liam Tran, Ryan N. Hoffman, View ORCID ProfileMarco Rolandi, View ORCID ProfileRichard E. Green, View ORCID ProfileDavid Haussler, View ORCID ProfileSofie R. Salama, View ORCID ProfileMircea Teodorescu
doi: https://doi.org/10.1101/2022.07.13.499938
Spencer T. Seiler
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
2Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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  • ORCID record for Spencer T. Seiler
Gary L. Mantalas
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
3Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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John Selberg
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Sergio Cordero
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Sebastian Torres-Montoya
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Pierre V. Baudin
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Victoria T. Ly
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Finn Amend
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Liam Tran
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
2Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Ryan N. Hoffman
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
3Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Marco Rolandi
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Richard E. Green
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
2Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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David Haussler
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
2Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
5Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA
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Sofie R. Salama
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
2Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
5Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, 95064, USA
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Mircea Teodorescu
1UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA
4Department of Electrical and Computer Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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  • For correspondence: mteodore@ucsc.edu
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ABSTRACT

Organ-on-a-chip systems combine microfluidics, cell biology, and tissue engineering to culture 3D organ-specific in vitro models that recapitulate the biology and physiology of their in vivo counterparts. Here, we have developed a multiplex platform that automates the culture of individual organoids in isolated microenvironments at user-defined media flow rates. Programmable workflows allow the use of multiple reagent reservoirs that may be applied to direct differentiation, study temporal variables, and grow cultures long term. Novel techniques in polydimethylsiloxane (PDMS) chip fabrication are described here that enable features on the upper and lower planes of a single PDMS substrate. RNA sequencing (RNA-seq) analysis of automated cerebral cortex organoid cultures shows benefits in reducing glycolytic and endoplasmic reticulum stress compared to conventional in vitro cell cultures.

Competing Interest Statement

S.T.S and G.L.M. are founders of OrganOmics, a company that may be affected by the research reported in the enclosed paper. All other authors declare no competing interests.

Footnotes

  • ↵* ssalama{at}ucsc.edu

  • https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207894

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted July 14, 2022.
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Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids
Spencer T. Seiler, Gary L. Mantalas, John Selberg, Sergio Cordero, Sebastian Torres-Montoya, Pierre V. Baudin, Victoria T. Ly, Finn Amend, Liam Tran, Ryan N. Hoffman, Marco Rolandi, Richard E. Green, David Haussler, Sofie R. Salama, Mircea Teodorescu
bioRxiv 2022.07.13.499938; doi: https://doi.org/10.1101/2022.07.13.499938
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Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids
Spencer T. Seiler, Gary L. Mantalas, John Selberg, Sergio Cordero, Sebastian Torres-Montoya, Pierre V. Baudin, Victoria T. Ly, Finn Amend, Liam Tran, Ryan N. Hoffman, Marco Rolandi, Richard E. Green, David Haussler, Sofie R. Salama, Mircea Teodorescu
bioRxiv 2022.07.13.499938; doi: https://doi.org/10.1101/2022.07.13.499938

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