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Validity Assessment of Michigan’s Proposed qPCR Threshold Value for Rapid Water-Quality Monitoring of E. coli Contamination

View ORCID ProfileJames N. McNair, Molly J. Lane, John J. Hart, Alexis M. Porter, Shannon Briggs, Benjamin Southwell, Tami Sivy, David C. Szlag, Brian T. Scull, Schuyler Pike, Erin Dreelin, Chris Vernier, Bonnie Carter, Josh Sharp, Penny Nowlin, Richard R. Rediske
doi: https://doi.org/10.1101/2022.07.16.500300
James N. McNair
aRobert B. Annis Water Resources Institute, 740 West Shoreline Dr., Muskegon, MI 49441, USA
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  • ORCID record for James N. McNair
  • For correspondence: mcnairja@gvsu.edu
Molly J. Lane
aRobert B. Annis Water Resources Institute, 740 West Shoreline Dr., Muskegon, MI 49441, USA
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John J. Hart
aRobert B. Annis Water Resources Institute, 740 West Shoreline Dr., Muskegon, MI 49441, USA
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Alexis M. Porter
aRobert B. Annis Water Resources Institute, 740 West Shoreline Dr., Muskegon, MI 49441, USA
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Shannon Briggs
bMichigan Department of Environment, Great Lakes, and Energy, 525 W. Allegan St., Lansing, MI 48909
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Benjamin Southwell
cLake Superior State University, 650 W Easterday Ave., Sault Ste Marie, MI 49783
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Tami Sivy
dSaginaw Valley State University, Department of Chemistry, 7400 Bay Road, University Center, MI 48710
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David C. Szlag
eOakland University, Department of Chemistry, 146 Library Dr., Rochester, MI 48309
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Brian T. Scull
aRobert B. Annis Water Resources Institute, 740 West Shoreline Dr., Muskegon, MI 49441, USA
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Schuyler Pike
fFerris State University, Shimadzu Core Laboratory, 820 Campus Dr., Big Rapids, MI 49307
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Erin Dreelin
gMichigan State University, Department of Fisheries and Wildlife, 420 Wilson Rd, East Lansing, MI 48824
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Chris Vernier
hAssurance Water Laboratory, Central Michigan District Health Dept., 103 N Bowery Ave, Gladwin, MI 48624
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Bonnie Carter
iOakland County Health Division Laboratory, 1200 N. Telegraph, Pontiac, MI, 48341
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Josh Sharp
jBiology Department, Northern Michigan University, 1401 Presque Isle Avenue, Marquette, MI 49855
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Penny Nowlin
kNorthern Michigan Regional Lab, Health Dept. of Northwest Michigan, 95 Livingston Blvd, Gaylord, MI 49735
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Richard R. Rediske
aRobert B. Annis Water Resources Institute, 740 West Shoreline Dr., Muskegon, MI 49441, USA
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Abstract

Michigan’s water-quality standards specify that E. coli concentrations at bathing beaches must not exceed 300 E. coli per 100 mL, as determined by the geometric mean of culture-based concentrations in three or more representative samples from a given beach on a given day. Culture-based analyses require 18–24 h to complete, so results are not available for issuing beach notifications (advisories or closings) until the day following collection. This one-day delay is problematic because E. coli concentrations at beaches can change markedly from one day to the next. qPCR-based E. coli concentrations, by contrast, can be obtained in only 3–4 h, making same-day beach notifications possible. Michigan has proposed a qPCR threshold value (qTV) for E. coli of 1.863 log10 gene copies per reaction as a potential equivalent value to the state standard, based on statistical analyses of a set of training data from 2016–2018. The main purpose of the present study is to assess the validity of the proposed qTV by determining whether the implied qPCR-based beach notification decisions agree well with culture-based decisions on two sets of test data (from 2016–2018 and 2019–2020), and whether performance of the proposed threshold is similar on the test and training data. The results show that performance of the proposed qTV on both sets of test data was consistently good (e.g., 95% agreement with culture-based beach notification decisions during 2019–2020) and was at least as good as its performance on the training data set, supporting its use as an equivalent value to the state standard.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • 1. An inconsistency in formatting author addresses was fixed. 2. The name of the Michigan Network for Environmental Health and Technology was corrected.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 02, 2022.
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Validity Assessment of Michigan’s Proposed qPCR Threshold Value for Rapid Water-Quality Monitoring of E. coli Contamination
James N. McNair, Molly J. Lane, John J. Hart, Alexis M. Porter, Shannon Briggs, Benjamin Southwell, Tami Sivy, David C. Szlag, Brian T. Scull, Schuyler Pike, Erin Dreelin, Chris Vernier, Bonnie Carter, Josh Sharp, Penny Nowlin, Richard R. Rediske
bioRxiv 2022.07.16.500300; doi: https://doi.org/10.1101/2022.07.16.500300
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Validity Assessment of Michigan’s Proposed qPCR Threshold Value for Rapid Water-Quality Monitoring of E. coli Contamination
James N. McNair, Molly J. Lane, John J. Hart, Alexis M. Porter, Shannon Briggs, Benjamin Southwell, Tami Sivy, David C. Szlag, Brian T. Scull, Schuyler Pike, Erin Dreelin, Chris Vernier, Bonnie Carter, Josh Sharp, Penny Nowlin, Richard R. Rediske
bioRxiv 2022.07.16.500300; doi: https://doi.org/10.1101/2022.07.16.500300

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