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Neutralizing antibody evasion and receptor binding features of SARS-CoV-2 Omicron BA.2.75

Yunlong Cao, Yuanling Yu, Weiliang Song, Fanchong Jian, Ayijiang Yisimayi, Can Yue, Rui Feng, Peng Wang, Lingling Yu, Na Zhang, View ORCID ProfileJing Wang, Tianhe Xiao, Ran An, Yao Wang, Jing Wang, Lu Liu, Sijie Yang, Xiao Niu, Qingqing Gu, Fei Shao, Xiaohua Hao, Ronghua Jin, Xiangxi Wang, Youchun Wang, Xiaoliang Sunney Xie
doi: https://doi.org/10.1101/2022.07.18.500332
Yunlong Cao
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
2Changping Laboratory, Beijing, P.R. China
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  • For correspondence: yunlongcao@pku.edu.cn xiangxi@ibp.ac.cn wangyc@nifdc.org.cn sunneyxie@biopic.pku.edu.cn
Yuanling Yu
3Division of HIV/AIDS and Sex-transmitted Virus Vaccines, Institute for Biological Product Control, National Institutes for Food and Drug Control (NIFDC), Beijing, P.R. China
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Weiliang Song
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
4School of Life Sciences, Peking University, Beijing, P.R. China
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Fanchong Jian
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
5College of Chemistry and Molecular Engineering, Peking University, Beijing, P.R. China
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Ayijiang Yisimayi
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
4School of Life Sciences, Peking University, Beijing, P.R. China
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Can Yue
6CAS Key Laboratory of Infection and Immunity, National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, P.R. China
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Rui Feng
6CAS Key Laboratory of Infection and Immunity, National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, P.R. China
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Peng Wang
2Changping Laboratory, Beijing, P.R. China
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Lingling Yu
2Changping Laboratory, Beijing, P.R. China
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Na Zhang
2Changping Laboratory, Beijing, P.R. China
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Jing Wang
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
4School of Life Sciences, Peking University, Beijing, P.R. China
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  • ORCID record for Jing Wang
Tianhe Xiao
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
7Joint Graduate Program of Peking-Tsinghua-NIBS, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China
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Ran An
2Changping Laboratory, Beijing, P.R. China
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Yao Wang
2Changping Laboratory, Beijing, P.R. China
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Jing Wang
2Changping Laboratory, Beijing, P.R. China
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Lu Liu
2Changping Laboratory, Beijing, P.R. China
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Sijie Yang
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
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Xiao Niu
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
5College of Chemistry and Molecular Engineering, Peking University, Beijing, P.R. China
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Qingqing Gu
2Changping Laboratory, Beijing, P.R. China
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Fei Shao
2Changping Laboratory, Beijing, P.R. China
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Xiaohua Hao
8Beijing Ditan Hospital, Capital Medical University, Beijing, P.R. China
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Ronghua Jin
8Beijing Ditan Hospital, Capital Medical University, Beijing, P.R. China
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Xiangxi Wang
2Changping Laboratory, Beijing, P.R. China
6CAS Key Laboratory of Infection and Immunity, National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, P.R. China
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  • For correspondence: yunlongcao@pku.edu.cn xiangxi@ibp.ac.cn wangyc@nifdc.org.cn sunneyxie@biopic.pku.edu.cn
Youchun Wang
2Changping Laboratory, Beijing, P.R. China
3Division of HIV/AIDS and Sex-transmitted Virus Vaccines, Institute for Biological Product Control, National Institutes for Food and Drug Control (NIFDC), Beijing, P.R. China
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  • For correspondence: yunlongcao@pku.edu.cn xiangxi@ibp.ac.cn wangyc@nifdc.org.cn sunneyxie@biopic.pku.edu.cn
Xiaoliang Sunney Xie
1Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, P.R. China
2Changping Laboratory, Beijing, P.R. China
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  • For correspondence: yunlongcao@pku.edu.cn xiangxi@ibp.ac.cn wangyc@nifdc.org.cn sunneyxie@biopic.pku.edu.cn
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Abstract

The Omicron subvariants BA.2.75 is rapidly raising in India. BA.2.75 also shows a local growth advantage compared to BA.2.38 and BA.4/BA.51. Its immune evasion capability and receptor binding affinity is unclear and requires investigation. Here, we show that BA.2.75 is more neutralization evasive than BA.2.12.1 against the plasma from post-vaccination BA.2 infection, but less compared to BA.4/BA.5. However, as shown in a small sample of plasma from post-vaccination Delta infection, BA.2.75 seems to be more immune evasive than BA.4/BA.5 in Delta-stimulated immune background, which may explain BA. 2.75’s growth advantage over BA.4/BA.5 in India. The additional N460K, G446S, D339H and R493Q mutations carried by BA.2.75 allows it to escape BA.2-effective neutralizing antibodies of different RBD epitopes, and BA.2.75 has a distinct antibody escaping profile from BA.4/BA.5. Compared to BA.2, REGN10933 and COV2-2196 partially recovered neutralization against BA.2.75 due to R493Q reversion. However, the efficacy of their corresponding cocktail was not significantly changed, since REGN10987 and COV2-2130 showed reduced neutralizing activity due to G446S. BA.2.75 exhibits higher ACE2-binding affinity than BA.4/BA.5, which should be contributed by R493Q and N460K, according to deep mutational scanning (DMS) results2. This affinity-strengthening feature is being further examined and verified, which will be updated soon.

Competing Interest Statement

X.S.X. and Y.C. are inventors on the provisional patent applications of BD series antibodies, which includes BD30-604 (DXP-604), BD55-5840 (SA58) and BD55-5514 (SA55). X.S.X. and Y.C. are founders of Singlomics Biopharmaceuticals. Other authors declare no competing interests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 19, 2022.
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Neutralizing antibody evasion and receptor binding features of SARS-CoV-2 Omicron BA.2.75
Yunlong Cao, Yuanling Yu, Weiliang Song, Fanchong Jian, Ayijiang Yisimayi, Can Yue, Rui Feng, Peng Wang, Lingling Yu, Na Zhang, Jing Wang, Tianhe Xiao, Ran An, Yao Wang, Jing Wang, Lu Liu, Sijie Yang, Xiao Niu, Qingqing Gu, Fei Shao, Xiaohua Hao, Ronghua Jin, Xiangxi Wang, Youchun Wang, Xiaoliang Sunney Xie
bioRxiv 2022.07.18.500332; doi: https://doi.org/10.1101/2022.07.18.500332
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Neutralizing antibody evasion and receptor binding features of SARS-CoV-2 Omicron BA.2.75
Yunlong Cao, Yuanling Yu, Weiliang Song, Fanchong Jian, Ayijiang Yisimayi, Can Yue, Rui Feng, Peng Wang, Lingling Yu, Na Zhang, Jing Wang, Tianhe Xiao, Ran An, Yao Wang, Jing Wang, Lu Liu, Sijie Yang, Xiao Niu, Qingqing Gu, Fei Shao, Xiaohua Hao, Ronghua Jin, Xiangxi Wang, Youchun Wang, Xiaoliang Sunney Xie
bioRxiv 2022.07.18.500332; doi: https://doi.org/10.1101/2022.07.18.500332

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