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In vivo functional genomics identifies essentiality of potassium homeostasis in medulloblastoma

View ORCID ProfileJerry J. Fan, Xin Wang, Anders W. Erickson, Patryk Skowron, Xian Wang, Xin Chen, Guanqiao Shan, Shahrzad Bahrampour, Yi Xiong, Weifan Dong, Namal Abeysundara, Michelle A. Francisco, Ronwell J. Pusong, Raúl A. Suárez, Hamza Farooq, Borja L. Holgado, Xiaochong Wu, Craig Daniels, Adam J. Dupuy, Juan Cadiñanos, Allan Bradley, Anindya Bagchi, Branden S. Moriarity, David A. Largaespada, A. Sorana Morrissy, Vijay Ramaswamy, Stephen C. Mack, Livia Garzia, Peter B. Dirks, Siyi Wanggou, Xuejun Li, Yu Sun, Michael D. Taylor, Xi Huang
doi: https://doi.org/10.1101/2022.07.23.501234
Jerry J. Fan
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
3Department of Molecular Genetics, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
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  • ORCID record for Jerry J. Fan
Xin Wang
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Anders W. Erickson
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Patryk Skowron
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Xian Wang
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
4Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, Ontario, M5S 3E1, Canada
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Xin Chen
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Guanqiao Shan
4Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, Ontario, M5S 3E1, Canada
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Shahrzad Bahrampour
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Yi Xiong
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
5Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, Hunan, 410008, China
6Hunan International Scientific and Technological Cooperation Base of Brain Tumor Research, Xiangya Hospital, Central South University, Changsha, Hunan, 410008, China
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Weifan Dong
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
3Department of Molecular Genetics, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
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Namal Abeysundara
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Michelle A. Francisco
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Ronwell J. Pusong
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Raúl A. Suárez
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Hamza Farooq
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
7Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, M5S 3E1, Canada
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Borja L. Holgado
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Xiaochong Wu
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Craig Daniels
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Adam J. Dupuy
8Department of Anatomy & Cell Biology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, 52246, USA
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Juan Cadiñanos
9Instituto de Medicina Oncológica y Molecular de Asturias (IMOMA), Oviedo, 33193, Spain
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Allan Bradley
10The Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
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Anindya Bagchi
11Tumor Initiation and Maintenance Program, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, 92037, USA
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Branden S. Moriarity
12Masonic Cancer Center, Department of Pediatrics, and Center for Genome Engineering, University of Minnesota, Minneapolis, MN, 55455, USA
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David A. Largaespada
12Masonic Cancer Center, Department of Pediatrics, and Center for Genome Engineering, University of Minnesota, Minneapolis, MN, 55455, USA
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A. Sorana Morrissy
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Vijay Ramaswamy
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
13Department of Paediatrics, University of Toronto, Toronto, Ontario, M5G 1X8, Canada
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Stephen C. Mack
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Livia Garzia
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
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Peter B. Dirks
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
3Department of Molecular Genetics, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
7Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, M5S 3E1, Canada
14Department of Surgery, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
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Siyi Wanggou
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
5Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, Hunan, 410008, China
6Hunan International Scientific and Technological Cooperation Base of Brain Tumor Research, Xiangya Hospital, Central South University, Changsha, Hunan, 410008, China
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Xuejun Li
5Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, Hunan, 410008, China
6Hunan International Scientific and Technological Cooperation Base of Brain Tumor Research, Xiangya Hospital, Central South University, Changsha, Hunan, 410008, China
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Yu Sun
4Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, Ontario, M5S 3E1, Canada
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Michael D. Taylor
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
7Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, M5S 3E1, Canada
14Department of Surgery, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
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  • For correspondence: xi.huang@sickkids.ca mdt.cns@gmail.com
Xi Huang
1Developmental & Stem Cell Biology Program, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
2Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, M5G 0A4, Canada
3Department of Molecular Genetics, University of Toronto, Toronto, Ontario, M5S 1A8, Canada
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  • For correspondence: xi.huang@sickkids.ca mdt.cns@gmail.com
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ABSTRACT

The identification of cancer maintenance genes—driver genes essential to tumor survival—is fundamental for developing effective cancer therapy. Transposon-based insertional mutagenesis screens can identify cancer driver genes broadly but not discriminate maintenance from progression or initiation drivers, which contribute to cancer phenotypes and tumorigenesis, respectively. We engineered a nested, double-jumping transposon system to first dysregulate gene expression during tumorigenesis and then restore gene expression following tumor induction, allowing for genome-wide screening of maintenance essentiality in vivo. In a mouse model of medulloblastoma, the most common pediatric malignancy, insertion and remobilization of this nested transposon uncovers potassium channel genes as recurrent maintenance drivers. In human medulloblastoma, KCNB2 is the most overexpressed potassium channel across Group 3, Group 4, and SHH subgroups, and Kcnb2 knockout in mice diminishes the replicative potential of medulloblastoma-propagating cells to mitigate tumor growth. Kcnb2 governs potassium homeostasis to regulate plasma membrane tension-gated EGFR signaling, which drives proliferative expansion of medulloblastoma-propagating cells. Thus, our novel transposon system reveals potassium homeostasis as essential to tumor maintenance through biomechanical modulation of membrane signaling.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* Co-first authors

  • Additional data added to Figure 6 and Supplemental Figure 7.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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In vivo functional genomics identifies essentiality of potassium homeostasis in medulloblastoma
Jerry J. Fan, Xin Wang, Anders W. Erickson, Patryk Skowron, Xian Wang, Xin Chen, Guanqiao Shan, Shahrzad Bahrampour, Yi Xiong, Weifan Dong, Namal Abeysundara, Michelle A. Francisco, Ronwell J. Pusong, Raúl A. Suárez, Hamza Farooq, Borja L. Holgado, Xiaochong Wu, Craig Daniels, Adam J. Dupuy, Juan Cadiñanos, Allan Bradley, Anindya Bagchi, Branden S. Moriarity, David A. Largaespada, A. Sorana Morrissy, Vijay Ramaswamy, Stephen C. Mack, Livia Garzia, Peter B. Dirks, Siyi Wanggou, Xuejun Li, Yu Sun, Michael D. Taylor, Xi Huang
bioRxiv 2022.07.23.501234; doi: https://doi.org/10.1101/2022.07.23.501234
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In vivo functional genomics identifies essentiality of potassium homeostasis in medulloblastoma
Jerry J. Fan, Xin Wang, Anders W. Erickson, Patryk Skowron, Xian Wang, Xin Chen, Guanqiao Shan, Shahrzad Bahrampour, Yi Xiong, Weifan Dong, Namal Abeysundara, Michelle A. Francisco, Ronwell J. Pusong, Raúl A. Suárez, Hamza Farooq, Borja L. Holgado, Xiaochong Wu, Craig Daniels, Adam J. Dupuy, Juan Cadiñanos, Allan Bradley, Anindya Bagchi, Branden S. Moriarity, David A. Largaespada, A. Sorana Morrissy, Vijay Ramaswamy, Stephen C. Mack, Livia Garzia, Peter B. Dirks, Siyi Wanggou, Xuejun Li, Yu Sun, Michael D. Taylor, Xi Huang
bioRxiv 2022.07.23.501234; doi: https://doi.org/10.1101/2022.07.23.501234

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