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The spectral underpinnings of pathogen spread on animal networks

View ORCID ProfileNicholas M. Fountain-Jones, Mathew Silk, Raima Appaw, Rodrigo Hamede, Julie Rushmore, Kimberly VanderWaal, Meggan Craft, Scott Carver, Michael Charleston
doi: https://doi.org/10.1101/2022.07.28.501936
Nicholas M. Fountain-Jones
1School of Natural Sciences, University of Tasmania, Hobart Australia 7001
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  • For correspondence: Nick.FountainJones@utas.edu.au
Mathew Silk
2CEFE, University of Montpellier, CNRS, EPHE, IRD, University of Paul Valéry Montpellier 3, Montpellier, France
3Centre for Ecology and Conservation, University of Exeter, Penryn Campus, Penryn, UK
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Raima Appaw
1School of Natural Sciences, University of Tasmania, Hobart Australia 7001
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Rodrigo Hamede
1School of Natural Sciences, University of Tasmania, Hobart Australia 7001
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Julie Rushmore
4Odum School of Ecology, University of Georgia, Athens, GA USA
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Kimberly VanderWaal
5Department of Veterinary Population Medicine, University of Minnesota, St Paul, MN, USA
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Meggan Craft
6Department of Ecology, Evolution, and Behavior, University of Minnesota, St Paul, MN, USA
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Scott Carver
1School of Natural Sciences, University of Tasmania, Hobart Australia 7001
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Michael Charleston
1School of Natural Sciences, University of Tasmania, Hobart Australia 7001
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Abstract

Predicting what factors promote or protect populations from infectious disease is a fundamental epidemiological challenge. Social networks, where nodes represent hosts and edges represent direct or indirect contacts between them, are key to quantifying these aspects of infectious disease dynamics. However, understanding the complex relationships between network structure and epidemic parameters in predicting spread has been out of reach. Here we draw on advances in spectral graph theory and interpretable machine learning, to build predictive models of pathogen spread on a large collection of empirical networks from across the animal kingdom. Using a small set of network spectral properties, we were able to predict pathogen spread with remarkable accuracy for a wide range of transmissibility and recovery rates. We validate our findings using well studied host-pathogen systems and provide a flexible framework for animal health practitioners to assess the vulnerability of a particular network to pathogen spread.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://spreadpredictr.shinyapps.io/spreadpredictr/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 01, 2022.
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The spectral underpinnings of pathogen spread on animal networks
Nicholas M. Fountain-Jones, Mathew Silk, Raima Appaw, Rodrigo Hamede, Julie Rushmore, Kimberly VanderWaal, Meggan Craft, Scott Carver, Michael Charleston
bioRxiv 2022.07.28.501936; doi: https://doi.org/10.1101/2022.07.28.501936
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The spectral underpinnings of pathogen spread on animal networks
Nicholas M. Fountain-Jones, Mathew Silk, Raima Appaw, Rodrigo Hamede, Julie Rushmore, Kimberly VanderWaal, Meggan Craft, Scott Carver, Michael Charleston
bioRxiv 2022.07.28.501936; doi: https://doi.org/10.1101/2022.07.28.501936

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