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Precise targeting for 3D cryo-correlative light and electron microscopy volume imaging of tissues using a FinderTOP

Marit de Beer, Deniz Daviran, Rona Roverts, Luco Rutten, Elena Macías Sánchez, Jurriaan R. Metz, Nico Sommerdijk, Anat Akiva
doi: https://doi.org/10.1101/2022.07.31.502212
Marit de Beer
1Electron Microscopy Center, Radboud Technology Center Microscopy, Radboud University Medical Center, Nijmegen
2Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen
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Deniz Daviran
1Electron Microscopy Center, Radboud Technology Center Microscopy, Radboud University Medical Center, Nijmegen
2Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen
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Rona Roverts
1Electron Microscopy Center, Radboud Technology Center Microscopy, Radboud University Medical Center, Nijmegen
2Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen
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Luco Rutten
2Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen
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Elena Macías Sánchez
2Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen
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Jurriaan R. Metz
3Department of Animal Ecology and Physiology, Radboud Institute for Biological and Environmental Sciences, Faculty of Science, Radboud University, Nijmegen, The Netherlands
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Nico Sommerdijk
1Electron Microscopy Center, Radboud Technology Center Microscopy, Radboud University Medical Center, Nijmegen
2Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen
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  • For correspondence: nico.sommerdijk@radboudumc.nl anat.akiva@radboudumc.nl
Anat Akiva
1Electron Microscopy Center, Radboud Technology Center Microscopy, Radboud University Medical Center, Nijmegen
2Department of Biochemistry, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen
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  • For correspondence: nico.sommerdijk@radboudumc.nl anat.akiva@radboudumc.nl
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Abstract

Cryo-correlative light and electron microscopy (cryoCLEM) is a powerful strategy to high resolution imaging in the unperturbed hydrated state, in particular for in combination with cryo-electron tomography (cryoET). In this approach fluorescence microscopy aids localizing the area of interest, and cryogenic focused ion beam/scanning electron microscopy (cryoFIB/SEM) allows preparation of thin cryo-lamellae for cryoET. However, the current method cannot be accurately applied on bulky (3D) samples such as tissues and organoids.

3D cryo-correlative imaging of large volumes is needed to close the resolution gap between cryo-light microscopy and cryoET, placing sub-nanometer observations in a larger biological context. Currently technological hurdles render 3D cryoCLEM an unexplored approach.

Here we demonstrate a cryoCLEM workflow for tissues, correlating 3D cryo-Airyscan confocal microscopy with 3D cryoFIB/SEM volume imaging. Accurate correlation is achieved by imprinting a FinderTOP pattern in the sample surface during high pressure freezing, and allows precise targeting for cryoFIB/SEM volume imaging and cryo-lift out for cryoTEM.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Abstract Figure 2 Typos

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Posted August 03, 2022.
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Precise targeting for 3D cryo-correlative light and electron microscopy volume imaging of tissues using a FinderTOP
Marit de Beer, Deniz Daviran, Rona Roverts, Luco Rutten, Elena Macías Sánchez, Jurriaan R. Metz, Nico Sommerdijk, Anat Akiva
bioRxiv 2022.07.31.502212; doi: https://doi.org/10.1101/2022.07.31.502212
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Precise targeting for 3D cryo-correlative light and electron microscopy volume imaging of tissues using a FinderTOP
Marit de Beer, Deniz Daviran, Rona Roverts, Luco Rutten, Elena Macías Sánchez, Jurriaan R. Metz, Nico Sommerdijk, Anat Akiva
bioRxiv 2022.07.31.502212; doi: https://doi.org/10.1101/2022.07.31.502212

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