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DeepST: A versatile graph contrastive learning framework for spatially informed clustering, integration, and deconvolution of spatial transcriptomics
Yahui Long, Kok Siong Ang, Mengwei Li, Kian Long Kelvin Chong, Raman Sethi, Chengwei Zhong, Hang Xu, Zhiwei Ong, Karishma Sachaphibulkij, Ao Chen, Zeng Li, Huazhu Fu, Min Wu, Hsiu Kim Lina Lim, Longqi Liu, Jinmiao Chen
doi: https://doi.org/10.1101/2022.08.02.502407
Yahui Long
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
Kok Siong Ang
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
Mengwei Li
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
Kian Long Kelvin Chong
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
Raman Sethi
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
Chengwei Zhong
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
Hang Xu
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
Zhiwei Ong
2National Neuroscience Institute (NNI), 11 Jalan Tan Tock Seng, Singapore 308433
Karishma Sachaphibulkij
3Immunology Translational Research Program, Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore (NUS), 5 Science Drive 2, Blk MD4, Level 3, Singapore 117545
Ao Chen
4BGI-ShenZhen, Shenzhen, China 518103
Zeng Li
2National Neuroscience Institute (NNI), 11 Jalan Tan Tock Seng, Singapore 308433
Huazhu Fu
5Institute of High Performance Computing (IHPC), Agency for Science, Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, Singapore 138632
Min Wu
6Institute for Infocomm Research, Agency for Science, Technology and Research (A*STAR), 1 Fusionopolis Way, #21-01 Connexis, Singapore 138632
Hsiu Kim Lina Lim
3Immunology Translational Research Program, Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore (NUS), 5 Science Drive 2, Blk MD4, Level 3, Singapore 117545
Longqi Liu
4BGI-ShenZhen, Shenzhen, China 518103
Jinmiao Chen
1Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos Building, Level 3, Singapore 138648
3Immunology Translational Research Program, Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore (NUS), 5 Science Drive 2, Blk MD4, Level 3, Singapore 117545
Posted August 03, 2022.
DeepST: A versatile graph contrastive learning framework for spatially informed clustering, integration, and deconvolution of spatial transcriptomics
Yahui Long, Kok Siong Ang, Mengwei Li, Kian Long Kelvin Chong, Raman Sethi, Chengwei Zhong, Hang Xu, Zhiwei Ong, Karishma Sachaphibulkij, Ao Chen, Zeng Li, Huazhu Fu, Min Wu, Hsiu Kim Lina Lim, Longqi Liu, Jinmiao Chen
bioRxiv 2022.08.02.502407; doi: https://doi.org/10.1101/2022.08.02.502407
DeepST: A versatile graph contrastive learning framework for spatially informed clustering, integration, and deconvolution of spatial transcriptomics
Yahui Long, Kok Siong Ang, Mengwei Li, Kian Long Kelvin Chong, Raman Sethi, Chengwei Zhong, Hang Xu, Zhiwei Ong, Karishma Sachaphibulkij, Ao Chen, Zeng Li, Huazhu Fu, Min Wu, Hsiu Kim Lina Lim, Longqi Liu, Jinmiao Chen
bioRxiv 2022.08.02.502407; doi: https://doi.org/10.1101/2022.08.02.502407
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