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Design Principles for Inflammasome Inhibition by Pyrin-Only-Proteins

Zachary Mazanek, Shuai Wu, Gretchen Belotte, Jeffery J. Zhou, Christina M. Stallings, View ORCID ProfileArchit Garg, Jacob Lueck, View ORCID ProfileJungsan Sohn
doi: https://doi.org/10.1101/2022.08.02.502519
Zachary Mazanek
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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Shuai Wu
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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Gretchen Belotte
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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Jeffery J. Zhou
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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Christina M. Stallings
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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Archit Garg
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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Jacob Lueck
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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Jungsan Sohn
1Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205
2Division of Rheumatology, Johns Hopkins University School of Medicine, Baltimore, MD 21205
3Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205
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  • ORCID record for Jungsan Sohn
  • For correspondence: jsohn@jhmi.edu
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Abstract

Inflammasomes are filamentous signaling platforms essential for host defense against various intracellular calamities such as pathogen invasion and genotoxic stresses. However, dysregulated inflammasomes cause an array of human diseases including autoinflammatory disorders and cancer. It was recently identified that endogenous pyrin-only-proteins (POPs) regulate inflammasomes by directly inhibiting their filament assembly. Here, by combining Rosetta in silico, in vitro, and in cellulo methods, we investigate the target specificity and inhibition mechanisms of POPs. In contrast to a previous report, we find that POP1 is a poor inhibitor of the central inflammasome adaptor ASC. Instead, POP1 inhibits the assembly of upstream receptor PYD filaments such as those of AIM2, IFI16, NLRP3, and NLRP6. Moreover, not only does POP2 directly suppress the nucleation of ASC, but it can also inhibit the elongation of receptor filaments. In addition to inhibiting the elongation of AIM2 and NLRP6 filaments, POP3 potently suppresses the nucleation of ASC. Our Rosetta analyses and biochemical experiments consistently suggest that a combination of favorable and unfavorable interactions between POPs and PYDs is necessary for effective recognition and inhibition. Together, we reveal the intrinsic target redundancy of POPs and their inhibitory mechanisms.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted August 02, 2022.
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Design Principles for Inflammasome Inhibition by Pyrin-Only-Proteins
Zachary Mazanek, Shuai Wu, Gretchen Belotte, Jeffery J. Zhou, Christina M. Stallings, Archit Garg, Jacob Lueck, Jungsan Sohn
bioRxiv 2022.08.02.502519; doi: https://doi.org/10.1101/2022.08.02.502519
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Design Principles for Inflammasome Inhibition by Pyrin-Only-Proteins
Zachary Mazanek, Shuai Wu, Gretchen Belotte, Jeffery J. Zhou, Christina M. Stallings, Archit Garg, Jacob Lueck, Jungsan Sohn
bioRxiv 2022.08.02.502519; doi: https://doi.org/10.1101/2022.08.02.502519

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