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An end-to-end pipeline based on open source deep learning tools for reliable analysis of complex 3D images of Medaka ovaries

View ORCID ProfileManon Lesage, Jérôme Bugeon, Manon Thomas, View ORCID ProfileThierry Pécot, View ORCID ProfileViolette Thermes
doi: https://doi.org/10.1101/2022.08.03.502611
Manon Lesage
1INRAE, Fish Physiology and Genomics Institute, 16 Allee Henri Fabre, Rennes 35000, France
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  • For correspondence: manon.lesage@inrae.fr violette.thermes@inrae.fr
Jérôme Bugeon
1INRAE, Fish Physiology and Genomics Institute, 16 Allee Henri Fabre, Rennes 35000, France
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Manon Thomas
1INRAE, Fish Physiology and Genomics Institute, 16 Allee Henri Fabre, Rennes 35000, France
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Thierry Pécot
2BIOSIT, UAR 3480 US 018, Université de Rennes 1, 2 rue Professeur Leon Bernard, Rennes 35042, France
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Violette Thermes
1INRAE, Fish Physiology and Genomics Institute, 16 Allee Henri Fabre, Rennes 35000, France
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  • For correspondence: manon.lesage@inrae.fr violette.thermes@inrae.fr
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Article Information

doi 
https://doi.org/10.1101/2022.08.03.502611
History 
  • August 5, 2022.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Manon Lesage1,#,
  2. Jérôme Bugeon1,
  3. Manon Thomas1,
  4. Thierry Pécot2 and
  5. Violette Thermes1,#
  1. 1INRAE, Fish Physiology and Genomics Institute, 16 Allee Henri Fabre, Rennes 35000, France
  2. 2BIOSIT, UAR 3480 US 018, Université de Rennes 1, 2 rue Professeur Leon Bernard, Rennes 35042, France
  1. ↵#Corresponding authors:
    manon.lesage{at}inrae.fr, violette.thermes{at}inrae.fr, INRAE, Laboratoire de Physiologie et Génomique des poissons, Campus de Beaulieu, 35042 Rennes cedex, France
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Posted August 05, 2022.
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An end-to-end pipeline based on open source deep learning tools for reliable analysis of complex 3D images of Medaka ovaries
Manon Lesage, Jérôme Bugeon, Manon Thomas, Thierry Pécot, Violette Thermes
bioRxiv 2022.08.03.502611; doi: https://doi.org/10.1101/2022.08.03.502611
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An end-to-end pipeline based on open source deep learning tools for reliable analysis of complex 3D images of Medaka ovaries
Manon Lesage, Jérôme Bugeon, Manon Thomas, Thierry Pécot, Violette Thermes
bioRxiv 2022.08.03.502611; doi: https://doi.org/10.1101/2022.08.03.502611

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