Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Virological characteristics of the SARS-CoV-2 Omicron BA.2.75

View ORCID ProfileAkatsuki Saito, Tomokazu Tamura, Jiri Zahradnik, Sayaka Deguchi, Koshiro Tabata, Izumi Kimura, Jumpei Ito, Hesham Nasser, Mako Toyoda, Kayoko Nagata, Keiya Uriu, Yusuke Kosugi, Shigeru Fujita, Daichi Yamasoba, Maya Shofa, MST Monira Begum, Yoshitaka Oda, Rigel Suzuki, Hayato Ito, Naganori Nao, Lei Wang, Masumi Tsuda, Kumiko Yoshimatsu, Yuki Yamamoto, Tetsuharu Nagamoto, Hiroyuki Asakura, Mami Nagashima, Kenji Sadamasu, Kazuhisa Yoshimura, Takamasa Ueno, Gideon Schreiber, Akifumi Takaori-Kondo, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Kotaro Shirakawa, Hirofumi Sawa, Takashi Irie, Kazuo Takayama, Keita Matsuno, View ORCID ProfileShinya Tanaka, Terumasa Ikeda, Takasuke Fukuhara, Kei Sato
doi: https://doi.org/10.1101/2022.08.07.503115
Akatsuki Saito
1Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, Miyazaki, Japan
2Graduate School of Medicine and Veterinary Medicine, University of Miyazaki, Miyazaki, Japan
3Center for Animal Disease Control, University of Miyazaki, Miyazaki, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Akatsuki Saito
Tomokazu Tamura
4Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jiri Zahradnik
5Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sayaka Deguchi
6Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Koshiro Tabata
7Division of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Izumi Kimura
8Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jumpei Ito
8Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Hesham Nasser
9Division of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus infection, Kumamoto University, Kumamoto, Japan
10Department of Clinical Pathology, Faculty of Medicine, Suez Canal University, Ismailia, Egypt
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mako Toyoda
11Division of Infection and immunity, Joint Research Center for Human Retrovirus infection, Kumamoto University, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kayoko Nagata
12Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Keiya Uriu
8Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
13Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yusuke Kosugi
8Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
13Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Shigeru Fujita
8Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
13Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Daichi Yamasoba
8Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
14Faculty of Medicine, Kobe University, Kobe, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Maya Shofa
1Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki, Miyazaki, Japan
2Graduate School of Medicine and Veterinary Medicine, University of Miyazaki, Miyazaki, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
MST Monira Begum
9Division of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus infection, Kumamoto University, Kumamoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yoshitaka Oda
15Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Rigel Suzuki
4Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Hayato Ito
4Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Naganori Nao
16Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Lei Wang
15Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan
17Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Masumi Tsuda
15Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan
17Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kumiko Yoshimatsu
18Institute for Genetic Medicine, Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yuki Yamamoto
19HiLung Inc., Kyoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Tetsuharu Nagamoto
19HiLung Inc., Kyoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Hiroyuki Asakura
20Tokyo Metropolitan Institute of Public Health, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mami Nagashima
20Tokyo Metropolitan Institute of Public Health, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kenji Sadamasu
20Tokyo Metropolitan Institute of Public Health, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kazuhisa Yoshimura
20Tokyo Metropolitan Institute of Public Health, Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Takamasa Ueno
11Division of Infection and immunity, Joint Research Center for Human Retrovirus infection, Kumamoto University, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Gideon Schreiber
5Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Akifumi Takaori-Kondo
12Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kotaro Shirakawa
12Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Hirofumi Sawa
7Division of Molecular Pathobiology, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
16Division of International Research Promotion, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
21One Health Research Center, Hokkaido University, Sapporo, Japan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Takashi Irie
22Institute of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kazuo Takayama
6Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan
23AMED-CREST, Japan Agency for Medical Research and Development (AMED), Tokyo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Keita Matsuno
21One Health Research Center, Hokkaido University, Sapporo, Japan.
24International Collaboration Unit, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
25Division of Risk Analysis and Management, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Shinya Tanaka
15Department of Cancer Pathology, Faculty of Medicine, Hokkaido University, Sapporo, Japan
17Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Shinya Tanaka
  • For correspondence: tanaka@med.hokudai.ac.jp ikedat@kumamoto-u.ac.jp fukut@pop.med.hokudai.ac.jp KeiSato@g.ecc.u-tokyo.ac.jp
Terumasa Ikeda
9Division of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus infection, Kumamoto University, Kumamoto, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: tanaka@med.hokudai.ac.jp ikedat@kumamoto-u.ac.jp fukut@pop.med.hokudai.ac.jp KeiSato@g.ecc.u-tokyo.ac.jp
Takasuke Fukuhara
4Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University, Sapporo, Japan.
26Laboratory of Virus Control, Research Institute for Microbial Diseases, Osaka University, Suita, Japan.
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: tanaka@med.hokudai.ac.jp ikedat@kumamoto-u.ac.jp fukut@pop.med.hokudai.ac.jp KeiSato@g.ecc.u-tokyo.ac.jp
Kei Sato
8Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
13Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
27International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
28International Vaccine Design Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
29Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan
30Collaboration Unit for Infection, Joint Research Center for Human Retrovirus infection, Kumamoto University, Kumamoto, Japan
31CREST, Japan Science and Technology Agency, Kawaguchi, Japan
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: tanaka@med.hokudai.ac.jp ikedat@kumamoto-u.ac.jp fukut@pop.med.hokudai.ac.jp KeiSato@g.ecc.u-tokyo.ac.jp
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

SARS-CoV-2 Omicron BA.2.75 emerged in May 2022. BA.2.75 is a BA.2 descendant but is phylogenetically different from BA.5, the currently predominant BA.2 descendant. Here, we showed that the effective reproduction number of BA.2.75 is greater than that of BA.5. While the sensitivity of BA.2.75 to vaccination- and BA.1/2 breakthrough infection-induced humoral immunity was comparable to that of BA.2, the immunogenicity of BA.2.75 was different from that of BA.2 and BA.5. Three clinically-available antiviral drugs were effective against BA.2.75. BA.2.75 spike exhibited a profound higher affinity to human ACE2 than BA.2 and BA.5 spikes. The fusogenicity, growth efficiency in human alveolar epithelial cells, and intrinsic pathogenicity in hamsters of BA.2.75 were comparable to those of BA.5 but were greater than those of BA.2. Our multiscale investigations suggest that BA.2.75 acquired virological properties independently of BA.5, and the potential risk of BA.2.75 to global health is greater than that of BA.5.

Competing Interest Statement

Yuki Yamamoto and Tetsuharu Nagamoto are founders and shareholders of HiLung, Inc. Yuki Yamamoto is a co-inventor of patents (PCT/JP2016/057254; "Method for inducing differentiation of alveolar epithelial cells", PCT/JP2016/059786, "Method of producing airway epithelial cells"). The other authors declare that no competing interests exist.

Footnotes

  • ↵33 Twitter: @SystemsVirology

  • ↵34 Lead Contact

  • Conflict of interest: Yuki Yamamoto and Tetsuharu Nagamoto are founders and shareholders of HiLung, Inc. Yuki Yamamoto is a co-inventor of patents (PCT/JP2016/057254; “Method for inducing differentiation of alveolar epithelial cells”, PCT/JP2016/059786, “Method of producing airway epithelial cells”). The other authors declare that no competing interests exist.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted August 08, 2022.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Virological characteristics of the SARS-CoV-2 Omicron BA.2.75
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Virological characteristics of the SARS-CoV-2 Omicron BA.2.75
Akatsuki Saito, Tomokazu Tamura, Jiri Zahradnik, Sayaka Deguchi, Koshiro Tabata, Izumi Kimura, Jumpei Ito, Hesham Nasser, Mako Toyoda, Kayoko Nagata, Keiya Uriu, Yusuke Kosugi, Shigeru Fujita, Daichi Yamasoba, Maya Shofa, MST Monira Begum, Yoshitaka Oda, Rigel Suzuki, Hayato Ito, Naganori Nao, Lei Wang, Masumi Tsuda, Kumiko Yoshimatsu, Yuki Yamamoto, Tetsuharu Nagamoto, Hiroyuki Asakura, Mami Nagashima, Kenji Sadamasu, Kazuhisa Yoshimura, Takamasa Ueno, Gideon Schreiber, Akifumi Takaori-Kondo, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Kotaro Shirakawa, Hirofumi Sawa, Takashi Irie, Kazuo Takayama, Keita Matsuno, Shinya Tanaka, Terumasa Ikeda, Takasuke Fukuhara, Kei Sato
bioRxiv 2022.08.07.503115; doi: https://doi.org/10.1101/2022.08.07.503115
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Virological characteristics of the SARS-CoV-2 Omicron BA.2.75
Akatsuki Saito, Tomokazu Tamura, Jiri Zahradnik, Sayaka Deguchi, Koshiro Tabata, Izumi Kimura, Jumpei Ito, Hesham Nasser, Mako Toyoda, Kayoko Nagata, Keiya Uriu, Yusuke Kosugi, Shigeru Fujita, Daichi Yamasoba, Maya Shofa, MST Monira Begum, Yoshitaka Oda, Rigel Suzuki, Hayato Ito, Naganori Nao, Lei Wang, Masumi Tsuda, Kumiko Yoshimatsu, Yuki Yamamoto, Tetsuharu Nagamoto, Hiroyuki Asakura, Mami Nagashima, Kenji Sadamasu, Kazuhisa Yoshimura, Takamasa Ueno, Gideon Schreiber, Akifumi Takaori-Kondo, The Genotype to Phenotype Japan (G2P-Japan) Consortium, Kotaro Shirakawa, Hirofumi Sawa, Takashi Irie, Kazuo Takayama, Keita Matsuno, Shinya Tanaka, Terumasa Ikeda, Takasuke Fukuhara, Kei Sato
bioRxiv 2022.08.07.503115; doi: https://doi.org/10.1101/2022.08.07.503115

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Microbiology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4684)
  • Biochemistry (10361)
  • Bioengineering (7675)
  • Bioinformatics (26337)
  • Biophysics (13529)
  • Cancer Biology (10686)
  • Cell Biology (15440)
  • Clinical Trials (138)
  • Developmental Biology (8497)
  • Ecology (12821)
  • Epidemiology (2067)
  • Evolutionary Biology (16862)
  • Genetics (11399)
  • Genomics (15478)
  • Immunology (10617)
  • Microbiology (25219)
  • Molecular Biology (10223)
  • Neuroscience (54473)
  • Paleontology (401)
  • Pathology (1668)
  • Pharmacology and Toxicology (2897)
  • Physiology (4342)
  • Plant Biology (9247)
  • Scientific Communication and Education (1586)
  • Synthetic Biology (2558)
  • Systems Biology (6781)
  • Zoology (1466)