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A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation

Huaming Xu, Zhijian Li, Chao-Chung Kuo, Katrin Götz, Thomas Look, Marcelo Augusto Szymanski de Toledo, Kristin Seré, View ORCID ProfileIvan G. Costa, View ORCID ProfileMartin Zenke
doi: https://doi.org/10.1101/2022.08.11.503623
Huaming Xu
1Department of Cell Biology, Institute of Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, Germany
2Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, 52074 Aachen, Germany
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Zhijian Li
3Institute for Computational Genomics, RWTH Aachen University Medical School, 52074 Aachen, Germany
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Chao-Chung Kuo
3Institute for Computational Genomics, RWTH Aachen University Medical School, 52074 Aachen, Germany
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Katrin Götz
1Department of Cell Biology, Institute of Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, Germany
2Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, 52074 Aachen, Germany
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Thomas Look
1Department of Cell Biology, Institute of Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, Germany
2Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, 52074 Aachen, Germany
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Marcelo Augusto Szymanski de Toledo
1Department of Cell Biology, Institute of Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, Germany
2Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, 52074 Aachen, Germany
4Department of Hematology, Oncology, Hemostaseology, and Stem Cell Transplantation, Faculty of Medicine, RWTH Aachen University, 52074 Aachen, Germany
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Kristin Seré
1Department of Cell Biology, Institute of Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, Germany
2Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, 52074 Aachen, Germany
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Ivan G. Costa
3Institute for Computational Genomics, RWTH Aachen University Medical School, 52074 Aachen, Germany
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  • ORCID record for Ivan G. Costa
Martin Zenke
1Department of Cell Biology, Institute of Biomedical Engineering, RWTH Aachen University Medical School, 52074 Aachen, Germany
2Helmholtz Institute for Biomedical Engineering, RWTH Aachen University, 52074 Aachen, Germany
4Department of Hematology, Oncology, Hemostaseology, and Stem Cell Transplantation, Faculty of Medicine, RWTH Aachen University, 52074 Aachen, Germany
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  • ORCID record for Martin Zenke
  • For correspondence: martin.zenke@rwth-aachen.de
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Abstract

Transcription factors play a determining role in lineage commitment and cell differentiation. Interferon regulatory factor 8 (IRF8), a hematopoietic transcription factor, is prominently upregulated in dendritic cells (DC) by autoactivation and controls DC differentiation and function. However, it is unclear how IRF8 autoactivation is controlled and eventually limited. Here we identified a novel long non-coding RNA transcribed from the +32 kb enhancer downstream of IRF8 transcription start site and expressed specifically in plasmacytoid DC (pDC), referred to as lncIRF8. A sequence element of the lncIRF8 promoter, but not lncIRF8 itself, is crucial for pDC and classical DC type 1 (cDC1) differentiation. In DC development IRF8 autoactivation is first initiated by flanking enhancers and then second controlled by feedback inhibition through the lncIRF8 promoter element in the +32 kb enhancer. Our work reveals a previously unrecognized negative feedback loop of IRF8 that orchestrates its own expression and thereby controls DC differentiation.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 12, 2022.
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A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation
Huaming Xu, Zhijian Li, Chao-Chung Kuo, Katrin Götz, Thomas Look, Marcelo Augusto Szymanski de Toledo, Kristin Seré, Ivan G. Costa, Martin Zenke
bioRxiv 2022.08.11.503623; doi: https://doi.org/10.1101/2022.08.11.503623
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A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation
Huaming Xu, Zhijian Li, Chao-Chung Kuo, Katrin Götz, Thomas Look, Marcelo Augusto Szymanski de Toledo, Kristin Seré, Ivan G. Costa, Martin Zenke
bioRxiv 2022.08.11.503623; doi: https://doi.org/10.1101/2022.08.11.503623

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