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Development and validation of PainFace, a software platform that simplifies and standardizes mouse grimace analyses

Eric S. McCoy, Sang Kyoon Park, Rahul P. Patel, Dan F. Ryan, Zachary J. Mullen, Jacob J. Nesbitt, Josh E. Lopez, Bonnie Taylor-Blake, James L. Krantz, Wenxin Hu, Rosanna L. Garris, Lucas V. Lima, Susana G. Sotocinal, Jean-Sebastien Austin, Adam D. Kashlan, Jessica A. Jimenez, Sanya Shah, Abigail K. Trocinski, Kelly A. Vanden, Rami M. Major, Hannah O. Bazick, Morgan R. Klein, Jeffrey S. Mogil, Guorong Wu, View ORCID ProfileMark J. Zylka
doi: https://doi.org/10.1101/2022.08.12.503790
Eric S. McCoy
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
2Department of Cell Biology & Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Sang Kyoon Park
3Department of Psychiatry, The University of North Carolina at Chapel Hill
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Rahul P. Patel
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Dan F. Ryan
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
2Department of Cell Biology & Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Zachary J. Mullen
4Kitware, Inc., Carrboro, NC, 27510, USA
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Jacob J. Nesbitt
4Kitware, Inc., Carrboro, NC, 27510, USA
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Josh E. Lopez
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Bonnie Taylor-Blake
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
2Department of Cell Biology & Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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James L. Krantz
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
2Department of Cell Biology & Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Wenxin Hu
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
2Department of Cell Biology & Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Rosanna L. Garris
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
2Department of Cell Biology & Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Lucas V. Lima
5Departments of Psychology and Anesthesia, Alan Edwards Centre for Research on Pain, McGill University, Montreal, QC, Canada
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Susana G. Sotocinal
5Departments of Psychology and Anesthesia, Alan Edwards Centre for Research on Pain, McGill University, Montreal, QC, Canada
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Jean-Sebastien Austin
5Departments of Psychology and Anesthesia, Alan Edwards Centre for Research on Pain, McGill University, Montreal, QC, Canada
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Adam D. Kashlan
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Jessica A. Jimenez
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Sanya Shah
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Abigail K. Trocinski
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Kelly A. Vanden
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Rami M. Major
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Hannah O. Bazick
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Morgan R. Klein
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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Jeffrey S. Mogil
5Departments of Psychology and Anesthesia, Alan Edwards Centre for Research on Pain, McGill University, Montreal, QC, Canada
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Guorong Wu
3Department of Psychiatry, The University of North Carolina at Chapel Hill
6Department of Computer Science, The University of North Carolina at Chapel Hill
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Mark J. Zylka
1UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
2Department of Cell Biology & Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
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  • ORCID record for Mark J. Zylka
  • For correspondence: zylka@med.unc.edu
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Abstract

Facial grimaces are now commonly used to quantify spontaneous pain in mice and other mammalian species, but scoring remains subjective and relies on humans with very different levels of proficiency. Here, we developed a Mouse Grimace Scale (MGS) for black-coated (C57BL/6) mice consisting of four facial action units (orbitals, nose, ears, whiskers). We used this scale to generate ground truth data from over 70,000 images of black mice in different settings. With this large data set, we developed a deep neural network and cloud-based software platform called PainFace (http://painface.net) that accurately scores facial grimaces of black mice on a 0–8 scale. PainFace generates over two orders of magnitude more MGS data than humans can realistically achieve, and at superhuman speed. By analyzing the frequency distribution of grimace scores, we found that mice spent >7x more time in a high grimace state following laparotomy surgery relative to sham surgery controls. The analgesic carprofen reduced the amount of time animals spent in this high grimace state after surgery. Specific facial action unit score combinations were overrepresented following laparotomy surgery, suggesting that characteristic facial expressions are associated with a high grimace state. We performed validation experiments in two labs located in different countries to demonstrate reproducibility of the PainFace platform. To further enhance rigor and reproducibility, we will invite pain researchers to beta test PainFace and then incorporate their feedback into the software and manuscript prior to peer review. While this study is focused on mice, PainFace was designed to simplify, standardize, and scale up grimace analyses with many other mammalian species, including humans.

Competing Interest Statement

RPP is the owner of HypothesisToHardware, LLC. This information was disclosed to UNC Chapel Hill.

Footnotes

  • https://painface.net

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 15, 2022.
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Development and validation of PainFace, a software platform that simplifies and standardizes mouse grimace analyses
Eric S. McCoy, Sang Kyoon Park, Rahul P. Patel, Dan F. Ryan, Zachary J. Mullen, Jacob J. Nesbitt, Josh E. Lopez, Bonnie Taylor-Blake, James L. Krantz, Wenxin Hu, Rosanna L. Garris, Lucas V. Lima, Susana G. Sotocinal, Jean-Sebastien Austin, Adam D. Kashlan, Jessica A. Jimenez, Sanya Shah, Abigail K. Trocinski, Kelly A. Vanden, Rami M. Major, Hannah O. Bazick, Morgan R. Klein, Jeffrey S. Mogil, Guorong Wu, Mark J. Zylka
bioRxiv 2022.08.12.503790; doi: https://doi.org/10.1101/2022.08.12.503790
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Development and validation of PainFace, a software platform that simplifies and standardizes mouse grimace analyses
Eric S. McCoy, Sang Kyoon Park, Rahul P. Patel, Dan F. Ryan, Zachary J. Mullen, Jacob J. Nesbitt, Josh E. Lopez, Bonnie Taylor-Blake, James L. Krantz, Wenxin Hu, Rosanna L. Garris, Lucas V. Lima, Susana G. Sotocinal, Jean-Sebastien Austin, Adam D. Kashlan, Jessica A. Jimenez, Sanya Shah, Abigail K. Trocinski, Kelly A. Vanden, Rami M. Major, Hannah O. Bazick, Morgan R. Klein, Jeffrey S. Mogil, Guorong Wu, Mark J. Zylka
bioRxiv 2022.08.12.503790; doi: https://doi.org/10.1101/2022.08.12.503790

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