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Cryo-EM structures and binding of mouse ACE2 to SARS-CoV-2 variants of concern

View ORCID ProfileDongchun Ni, View ORCID ProfilePriscilla Turelli, View ORCID ProfileBertrand Beckert, View ORCID ProfileSergey Nazarov, View ORCID ProfileEmiko Uchikawa, View ORCID ProfileAlexander Myasnikov, View ORCID ProfileFlorence Pojer, View ORCID ProfileDidier Trono, View ORCID ProfileHenning Stahlberg, View ORCID ProfileKelvin Lau
doi: https://doi.org/10.1101/2022.08.19.504450
Dongchun Ni
1Laboratory of Biological Electron Microscopy (LBEM), Institute of Physics, School of Basic 15 Science, École Polytechnique Fédérale de Lausanne (EPFL), and Dep. of Fund. Microbiology, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland
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Priscilla Turelli
2Laboratory of Virology and Genetics (LVG), School of Life Sciences, École polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland
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Bertrand Beckert
3Dubochet Center for Imaging (DCI), École polytechnique fédérale de Lausanne (EPFL) and University of Lausanne, Lausanne, Switzerland
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Sergey Nazarov
3Dubochet Center for Imaging (DCI), École polytechnique fédérale de Lausanne (EPFL) and University of Lausanne, Lausanne, Switzerland
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Emiko Uchikawa
3Dubochet Center for Imaging (DCI), École polytechnique fédérale de Lausanne (EPFL) and University of Lausanne, Lausanne, Switzerland
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Alexander Myasnikov
3Dubochet Center for Imaging (DCI), École polytechnique fédérale de Lausanne (EPFL) and University of Lausanne, Lausanne, Switzerland
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Florence Pojer
4Protein Production and Structure Characterization Core Facility (PTPSP), School of Life Sciences, École polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland
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Didier Trono
2Laboratory of Virology and Genetics (LVG), School of Life Sciences, École polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland
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Henning Stahlberg
1Laboratory of Biological Electron Microscopy (LBEM), Institute of Physics, School of Basic 15 Science, École Polytechnique Fédérale de Lausanne (EPFL), and Dep. of Fund. Microbiology, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland
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  • For correspondence: henning.stahlberg@epfl.ch kelvin.lau@epfl.ch
Kelvin Lau
4Protein Production and Structure Characterization Core Facility (PTPSP), School of Life Sciences, École polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland
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  • For correspondence: henning.stahlberg@epfl.ch kelvin.lau@epfl.ch
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ABSTRACT

Investigation of potential hosts of the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is crucial to understanding future risks of spillover and spillback. SARS-CoV-2 has been reported to be transmitted from humans to various animals after requiring relatively few mutations.1 Mice are well adapted to human environments, frequently come in contact with humans, are used widely as infection models, and may act as reservoirs for SARS-CoV-2.2 Structural and binding data of the mouse ACE2 receptor with the Spike protein of newly identified SARS-CoV-2 variants are needed to better understand the impact of variants of concern (VOC). Previous studies have developed mouse-adapted variants and have identified some determinants of binding.3,4 Here we report the cryo-EM structures of mouse ACE2 bound to Spike ectodomains of four different VOC: Beta, Omicron BA.1, Omicron BA.2.12.1 and Omicron BA.4/5. These variants represent the oldest to the newest variants that are able to bind the mouse ACE2 receptor. Our high-resolution structural data complemented with bio-layer interferometry (BLI) binding assays reveal a requirement for a combination of mutations in the Spike protein to enable the binding to mouse ACE2.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 20, 2022.
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Cryo-EM structures and binding of mouse ACE2 to SARS-CoV-2 variants of concern
Dongchun Ni, Priscilla Turelli, Bertrand Beckert, Sergey Nazarov, Emiko Uchikawa, Alexander Myasnikov, Florence Pojer, Didier Trono, Henning Stahlberg, Kelvin Lau
bioRxiv 2022.08.19.504450; doi: https://doi.org/10.1101/2022.08.19.504450
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Cryo-EM structures and binding of mouse ACE2 to SARS-CoV-2 variants of concern
Dongchun Ni, Priscilla Turelli, Bertrand Beckert, Sergey Nazarov, Emiko Uchikawa, Alexander Myasnikov, Florence Pojer, Didier Trono, Henning Stahlberg, Kelvin Lau
bioRxiv 2022.08.19.504450; doi: https://doi.org/10.1101/2022.08.19.504450

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